PyAnnotate
Package for annotation of genomic variant files
https://github.com/ionox0/pyannotate https://pypi.org/project/pyvcfannotate/
Responsibilities
- Extract relevant details from VCF records
- Merge records with variant info from EXAC API
- Write output to MAF format
Usage:
pip install pyvcfannotate
pyannotate --vcf_path variants.vcf