inveniosoftware-attic / invenio-ext Goto Github PK
View Code? Open in Web Editor NEWInvenio module that provides integration with Flask extensions.
License: GNU General Public License v2.0
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installation: check dependencies
- move missing dependencies from
invenio
restful: setup_app wrong arguments
If the restful extension is enabled I get the following error:
18:29:11 web.1 | File "/Users/jmartinm/.virtualenvs/inspire-latest-packagesv3/lib/python2.7/site-packages/pkg_resources/__init__.py", line 2666, in load_entry_point
18:29:11 web.1 | return ep.load()
18:29:11 web.1 | File "/Users/jmartinm/.virtualenvs/inspire-latest-packagesv3/lib/python2.7/site-packages/pkg_resources/__init__.py", line 2339, in load
18:29:11 web.1 | return self.resolve()
18:29:11 web.1 | File "/Users/jmartinm/.virtualenvs/inspire-latest-packagesv3/lib/python2.7/site-packages/pkg_resources/__init__.py", line 2345, in resolve
18:29:11 web.1 | module = __import__(self.module_name, fromlist=['__name__'], level=0)
18:29:11 web.1 | File "/Users/jmartinm/.virtualenvs/inspire-latest-packagesv3/src/invenio-base/invenio_base/manage.py", line 28, in <module>
18:29:11 web.1 | manager = Manager(create_app(), with_default_commands=False)
18:29:11 web.1 | File "/Users/jmartinm/.virtualenvs/inspire-latest-packagesv3/src/invenio-base/invenio_base/factory.py", line 279, in create_app
18:29:11 web.1 | extensions=ExtensionRegistry(app),
18:29:11 web.1 | File "/Users/jmartinm/.virtualenvs/inspire-latest-packagesv3/lib/python2.7/site-packages/flask_registry/registries/appdiscovery.py", line 153, in __init__
18:29:11 web.1 | self.register(app, ext_name)
18:29:11 web.1 | File "/Users/jmartinm/.virtualenvs/inspire-latest-packagesv3/lib/python2.7/site-packages/flask_registry/registries/appdiscovery.py", line 166, in register
18:29:11 web.1 | ext(app)
18:29:11 web.1 | File "/Users/jmartinm/.virtualenvs/inspire-latest-packagesv3/src/invenio-ext/invenio_ext/restful/__init__.py", line 344, in setup_app
18:29:11 web.1 | 'restful', app=app, with_setup=True
18:29:11 web.1 | File "/Users/jmartinm/.virtualenvs/inspire-latest-packagesv3/lib/python2.7/site-packages/flask_registry/registries/modulediscovery.py", line 254, in __init__
18:29:11 web.1 | self.discover(app=app)
18:29:11 web.1 | File "/Users/jmartinm/.virtualenvs/inspire-latest-packagesv3/lib/python2.7/site-packages/flask_registry/registries/modulediscovery.py", line 175, in discover
18:29:11 web.1 | self._discover_module(pkg)
18:29:11 web.1 | File "/Users/jmartinm/.virtualenvs/inspire-latest-packagesv3/lib/python2.7/site-packages/flask_registry/registries/modulediscovery.py", line 186, in _discover_module
18:29:11 web.1 | self.register(module)
18:29:11 web.1 | File "/Users/jmartinm/.virtualenvs/inspire-latest-packagesv3/src/invenio-ext/invenio_ext/restful/__init__.py", line 341, in register
18:29:11 web.1 | *args, **kwargs)
18:29:11 web.1 | File "/Users/jmartinm/.virtualenvs/inspire-latest-packagesv3/lib/python2.7/site-packages/flask_registry/registries/core.py", line 354, in register
18:29:11 web.1 | setup_func(*args, **kwargs)
18:29:11 web.1 | TypeError: setup_app() takes exactly 1 argument (2 given)
which seems to be caused by passing the api parameter here which is not expected in the setup_app() function.
legacy: remove precached values for logged in user
Can we remove the precached values?
I found a message compatibility layer only. They are still necessary or we can simply remove them?
I found they are used here:
- invenio-deposit/invenio_deposit/models.py
564: auth_types = user_info.get('precached_allowed_deposition_types', set())
- invenio-deposit/invenio_deposit/restful.py
158: return type_ in current_user.get('precached_allowed_deposition_types', [])
- invenio-search/invenio_search/facet_builders.py
61: current_user.get('precached_permitted_restricted_collections', []),
- invenio-search/invenio_search/enhancers/collection_filter.py
111: 'precached_permitted_restricted_collections', [])
- invenio-formatter/invenio_formatter/templates/format/record/Default_HTML_MARC.tpl
20:<pre>{{ tfn_get_fieldvalues_alephseq_like(recid, [], current_user.get('precached_canseehiddenmarctags', False))|safe }}</pre>
- invenio-formatter/invenio_formatter/templates/format/record/Default_text_MARC.tpl
1:{{ tfn_get_fieldvalues_alephseq_like(recid, [], current_user.get('precached_canseehiddenmarctags', False))|safe }}
remove mysql from direct dependencies
If the db is up to the app developer, then including mysql-python as a dependency is a problem since for the build to be successful, mysql needs to be installed on the machine, otherwise you'll get this error.
Collecting MySQL-python>=1.2.5 (from invenio-ext>=0.1.0->invenio-access->hepdata==2.0.0.dev20150000)
Using cached MySQL-python-1.2.5.zip
Complete output from command python setup.py egg_info:
sh: mysql_config: command not found
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-build-GSqXWu/MySQL-python/setup.py", line 17, in <module>
metadata, options = get_config()
File "/tmp/pip-build-GSqXWu/MySQL-python/setup_posix.py", line 43, in get_config
libs = mysql_config("libs_r")
File "/tmp/pip-build-GSqXWu/MySQL-python/setup_posix.py", line 25, in mysql_config
raise EnvironmentError("%s not found" % (mysql_config.path,))
EnvironmentError: mysql_config not found
sqlalchemy `todict` intbitset conversion fails on infinite sets
Given an infinite intbitset,
intbitset(trailing_bits=True)and this SQLAlchemy type,
class IntBitSetType(types.TypeDecorator):
impl = types.BLOB
def process_bind_param(self, value, dialect):
if value is None:
return None
return intbitset(value).fastdump()
def process_result_value(self, value, dialect):
if value is None:
return None
return intbitset(value)calling dict() on an instance that contains it, raises this exception:
...
File "/home/gs-sis/.virtualenvs/invenio/src/invenio-checker/invenio_checker/views/admin.py", line 201, in get_tasks_data
rule_d = dict(rule)
File "/home/gs-sis/.virtualenvs/invenio/src/invenio/invenio/ext/sqlalchemy/utils.py", line 116, in todict
value = value.tolist()
File "intbitset.pyx", line 770, in intbitset.intbitset.tolist (intbitset/intbitset.c:12711)
File "intbitset.pyx", line 775, in intbitset.intbitset.tolist (intbitset/intbitset.c:12641)
OverflowError: It's impossible to retrieve a list of an infinite set
intbitset behaves reasonably here, but this conversion was not asked for. Why are these conversions forced in todict?
global: deprecate package
Do we have a common way to deprecate packages?
setup: Flask-OAuthlib version too low
Flask-OAuthlib>=0.6.0,<0.7
On the travis build, without pinning, 0.9.3 is installed since this is what is required by the oauth libs.
Requirement.parse('Flask-OAuthlib>=0.9.3'), set(['invenio-oauth2server', 'invenio-oauthclient']))
pkg_resources.ContextualVersionConflict:
(Flask-OAuthlib 0.9.3 (/home/travis/virtualenv/python2.7.9/lib/python2.7/site-packages),
Requirement.parse('Flask-OAuthlib<0.7,>=0.6.0'), set(['invenio-ext']))
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