when looking at pngs, it is useful to be able to see which mappings were rejected

I see we have <div class="snippet-clipboard-content notranslate position-relative

Include SiblingOf in json output about boomer HOT 2 CLOSED

cmungall commented on June 10, 2024

Include SiblingOf in json output

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Comments (2)

balhoff commented on June 10, 2024 1

I think the generated OWL may be incomplete anyway

I'll look at this—it is there in the search but must have a problem being translated back to OWL for output.

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cmungall commented on June 10, 2024

I see we have

  --output-internal-axioms | -e  <bool>
        Include axioms used to enforce proper subclass relationships (e.g. generated disjoint sibling classes) in OWL output (default false).

note: the -e shorthand is a lie as that is already used for exhaustive search

but this doesn't make simple triples, and I think the generated OWL may be incomplete anyway

for example, when using the ptable above I get:


# Class: <http://boom.monarchinitiative.org/vocab/DisjointSibling#c2faaa9fb6823c53d64ff5d60f0367b41c04c2f2> (<http://boom.monarchinitiative.org/vocab/DisjointSibling#c2faaa9fb6823c53d64ff5d60f0367b41c04c2f2>)

SubClassOf(<http://boom.monarchinitiative.org/vocab/DisjointSibling#c2faaa9fb6823c53d64ff5d60f0367b41c04c2f2> <http://example.org/B/1>)

# Class: <http://boom.monarchinitiative.org/vocab/DisjointSibling#6f7e726aacf6262c47aa5670a09c14c50c6c118e> (<http://boom.monarchinitiative.org/vocab/DisjointSibling#6f7e726aacf6262c47aa5670a09c14c50c6c118e>)

SubClassOf(<http://boom.monarchinitiative.org/vocab/DisjointSibling#6f7e726aacf6262c47aa5670a09c14c50c6c118e> <http://example.org/A/1>)

# Class: <http://example.org/A/2> (<http://example.org/A/2>)

EquivalentClasses(<http://example.org/A/2> <http://example.org/B/1>)

there needs to be disjointness axioms added

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