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View Code? Open in Web Editor NEWRecover transcript counts from log-normalized UMI counts data.
Recover transcript counts from log-normalized UMI counts data.
creating a conda environment for recover-counts
conda create --name RecCounts
activating the created conda environment
conda activate RecCounts
installing required dependency
conda install -c conda-forge python=3.8
pip install h5py
pip install pandas
pip install scanpy
#Downloading the test data set
curl -O ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3516nnn/GSM3516673/suppl/GSM3516673_MSK_LX682_NORMAL_dense.csv.gz
python -m unittest test.py
Getting an bus error python3.8 -m unittest test.py
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