ikmb / gwas-qc Goto Github PK

Hi
I just recognised that the sample numbers do not fit in-between in the report.
One reason: There is no proof if the samples listed in the manual blacklist are really in the dataset.

As far as I see there is an additional small error but not 100% sure, as I am not able to figure out which samples where removed based on the pca.

Best
Mareike

Hi, would there be a more detailed tutorial or manual on how to set the "allowed_diagnoses" key under various conditions, like for quantitative trait

Hi,

I got the following error while running the pipeline for the test dataset. Please advise on how to overcome this issue. Thanks a lot.

Samar

Error executing process > 'batch_statistics (Example/1000G_controls)'
  
  Caused by:
    Failed to pull singularity image
    command: singularity pull  --name jkaessens-ikmb-gwas-qc-assoc-assets.sif library://jkaessens/ikmb-gwas/qc-assoc-assets.sif > /dev/null
    status : 255
    message:
      [33mWARNING: No default remote in use, falling back to: https://library.sylabs.io
      FATAL:   While pulling library image: image jkaessens/ikmb-gwas/qc-assoc-assets.sif:latest (amd64) does not exist in the library
```