Comments (12)
0.220
. It's in the table of the thesis chapter I shared
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Missing parameters
- Distance due to rain splash
- Distance due to wind
- Spore deposition
- Rainfall threshold
- Potentially infective spore pro
- The duration for which when a new growing point is susceptible
- Base temperature for spore growth
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I have not finished adding parameters, these will likely be in the parameters when I am done
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I can add them if you like.
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If you could add sporesPerInfectiveGPPerWetHour
which needs to be passed down to the potentially_infective_spores
function
For now that would be good, I'll start review the need to add others.
Ones like 6. "The duration for which when a new growing point is susceptible" are already in there
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By definition, it would be the number of spores per infective grouping point (lesion) in a wet hour. It's value is 0.15
in the model script - the low value is counter intuitive (it should be in thousands), so I searched the entire model script. Turns out that it's been defined, but not being used in the functions. I searched both Art and Diggle papers, it's not there either. I think this is redundant like many others that have been defined but not actually used. By the way sporesPerInfectiveGPPerWetHour
is not listed in the table of parameters listed above.
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I beleive the parameter is variable dependant on the cultivar and is the value Spi
The Diggle paper give 3 possible values, 0.25, 0.43 or 3.70 to each respective cultivar Wonga , Myallie and Kiev Mutant.
The 0.15 value is what is given in the Mathematica code, this might be a parameter that needs consideration for the Chickpea varieties.
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That would be spore rate
. I have written in the methods - taken from Coventry.
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What value did they find fit the observed data best?
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spore_rate
is spores_per_gp_per_wet_hour
and is set at 0.22 as default but can be changed by the user.
See e73445b
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Added
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Related Issues (20)
- contradiction in definition of primary infection intensity HOT 4
- Why not call it `seedling_inoculum_intensity` ? HOT 7
- How come there are two sources of inoculum in a single function? HOT 26
- Why is it relevant for random foci only? HOT 4
- Same definition and values in a function. We only need one HOT 2
- Why is primary infection intensity zero and 1 at the same time? HOT 3
- This can be deleted. There is no association between them HOT 1
- tic.R file make cause CRAN rejection HOT 3
- Mac checks failing due to `sf` dependency HOT 5
- devtools::buildreadme reverts changes HOT 14
- Rename master branch to main HOT 6
- Readme file doesn't knit HOT 14
- `dev` version is out of date HOT 1
- URL isn't clearly found HOT 2
- 'Rcpp_precious_remove' not provided by package 'Rcpp'” HOT 4
- spores_per_gp_per_wet_hour documentation is incomplete
- Check cap/lower-case in documentation for parameter descriptions
- `== FALSE` used incorrectly in several locations
- Found if() conditions comparing class() to string HOT 1
- Several internal functions lack examples
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