Code Monkey home page Code Monkey logo

dreamr's Introduction

DreaMR

Diffusion-driven Counterfactual Explanation for Functional MRI

Official PyTorch implementation of DreaMR described in the paper.

Overall View

Counterfactual Generation

Training of the Diffusion Prior

Running

Dependencies

  • python >= 3.7
  • numpy >= 1.21.4
  • torch >= 1.10.1
  • torch-cuda >= 10.2
  • torchvision >= 0.11.2
  • tqdm >= 4.62.3

Dataset

We use three datasets for our experiments in the paper, HCP-Rest, HCP-Task, ID1000 datasets. Due to privacy concerns, we are unable to share the datasets. But you can download them from their official sites.

But we provide a dummy data loader to show what is expected by the dataset.py file.

Classifier Training

Here we provide an example transformer based classifier (official repo here) which is used for the counterfactual generations.

python main.py --targetDataset datasetName --method bolT_classify --do train

Please note that you have to implement the dataset loader and do the required changes in the code to import your loader. Also based on the dataset your using, set the correct variables (nOfClasses, dynamicLength) in the main file.

Biomarker Identification

Coming Soon...

dreamr's People

Stargazers

 avatar  avatar  avatar  avatar  avatar

Watchers

 avatar  avatar

dreamr's Issues

At least two files are missing

Hi,
Hi, when I tested your code, Python indicated that the Analysis package and Utils.metrics are missing. Could you please provide these two files? Thank you!

Hua

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    ๐Ÿ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. ๐Ÿ“Š๐Ÿ“ˆ๐ŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google โค๏ธ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.