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This is BlueMatter, the molecular dynamics application which was used to exercise the BlueGene/L and BlueGene/P range of supercomputers. This code is written to the hardware interfaces on BlueGene/L and BlueGene/P, rather than to MPI; so it would require some rework to be usable on current supercomputers. Code not written by IBMers has been removed; you are recommended to visit http://fftw.org/ and http://numerical.recipes/ to find the missing code. BlueMatter is set up to build with a version of ODE, the OSF Development Environment. You can find the appropriate version of ODE here https://github.com/IBM/ode .