Comments (2)
Fixed by IBAMR/IBSAMRAI2#3 (this repo is not yet publicly available)
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A little more on this one, for the sake of putting my notes somewhere:
This function is unnecessarily expensive (it computes something we never use) but, for most of the stuff I profile, IBFE is a lot more expensive. However - for problems where the SAMRAI linear solves take up the majority of runtime, this function dominates total runtime (It's something like O(n_patches2), which means it is also O(n_procs2)). My valve benchmark (which contains several small elastic structures in a large domain) spent 60% of its time calling this function. I'd guess that this function made it this far into SAMRAI (it is still in SAMRAI today) because few (possibly zero outside our group!) SAMRAI users solve parabolic or elliptic problems at scale.
We knew about this back when Elijah D published his thesis but those patches never quite made it into IBAMR, and I didn't notice because I spend most of my time profiling IBFE.
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Related Issues (20)
- executeIntegrateHierarchyCallbackFcns behavior in the outermost derived class HOT 6
- Avoid globally namespaced Variables
- IBFE examples should have an option to output stress and strain HOT 1
- Update bundled boost HOT 1
- Marker data weird behavior with restarts
- The draft, and actually writing some tutorial programs HOT 4
- Possible bug in the operator? HOT 4
- IBRedundantInitializer sets up too many target points
- Bug in IBTK_MPI::allGather() HOT 3
- Diffusion time stepping scheme in AdvDiffSemiImplicitHierarchyIntegrator HOT 8
- some problems about the guide "building on Linux" HOT 3
- IBAMR 0.14: January 26, 2023 HOT 5
- Remove our dependency on open.cdash.org
- bug in nullspace removal? HOT 7
- IBAMR 0.15: June 7, 2024 HOT 2
- Add a function to index utilities which can compute cell centers
- CartGridFunction::setDataOnPatch() should probably be protected HOT 2
- P_problem_coef objects HOT 5
- Specifying P_problem_coef in StaggeredStokesOperator class HOT 12
- Add an automatic restart option
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