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vadesc's Introduction

👋 Hi! My name is Ričards Marcinkevičs. 🎓 Currently, I am a PhD student at the Institute for Machine Learning, Department of Computer Science, ETH Zurich. I am a Medical Data Science group member supervised by Prof. Dr. Julia E. Vogt and co-advised by Prof. Dr. Fanny Yang.

🤖 At the moment, I am broadly interested in interpretable and explainable machine learning. In particular, I would like to understand what are the inductive biases for neural networks that may render the model interpretable in specific use-cases and how such inductive biases may be incorporated into the model? Moreover, how can we leverage interpretations and explanations to obtain actionable insights about the data or the model itself, for instance, to perform scientific discovery or make our models fairer and more robust? From the application perspective, I work on time series and survival analysis and enjoy participating in interdisciplinary projects and leveraging ML methods to analyse biomedical data.

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vadesc's Issues

Could not create the environment

Hi,
I could not create the conda environment by using .yml file, it raised an error. Could you please check it?

>>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

Traceback (most recent call last):
  File "/Users/ahmetgorkemer/opt/anaconda3/lib/python3.9/site-packages/conda/exceptions.py", line 1118, in __call__
    return func(*args, **kwargs)
  File "/Users/ahmetgorkemer/opt/anaconda3/lib/python3.9/site-packages/conda_env/cli/main.py", line 78, in do_call
    exit_code = getattr(module, func_name)(args, parser)
  File "/Users/ahmetgorkemer/opt/anaconda3/lib/python3.9/site-packages/conda/notices/core.py", line 109, in wrapper
    return func(*args, **kwargs)
  File "/Users/ahmetgorkemer/opt/anaconda3/lib/python3.9/site-packages/conda_env/cli/main_create.py", line 101, in execute
    spec = specs.detect(name=name, filename=get_filename(args.file), directory=os.getcwd())
  File "/Users/ahmetgorkemer/opt/anaconda3/lib/python3.9/site-packages/conda_env/specs/__init__.py", line 46, in detect
    if spec.can_handle():
  File "/Users/ahmetgorkemer/opt/anaconda3/lib/python3.9/site-packages/conda_env/specs/yaml_file.py", line 18, in can_handle
    self._environment = env.from_file(self.filename)
  File "/Users/ahmetgorkemer/opt/anaconda3/lib/python3.9/site-packages/conda_env/env.py", line 169, in from_file
    return from_yaml(yamlstr, filename=filename)
  File "/Users/ahmetgorkemer/opt/anaconda3/lib/python3.9/site-packages/conda_env/env.py", line 143, in from_yaml
    data = yaml_safe_load(yamlstr)
  File "/Users/ahmetgorkemer/opt/anaconda3/lib/python3.9/site-packages/conda/common/serialize.py", line 67, in yaml_safe_load
    return _yaml_safe().load(string)
  File "/Users/ahmetgorkemer/opt/anaconda3/lib/python3.9/site-packages/ruamel/yaml/main.py", line 434, in load
    return constructor.get_single_data()
  File "/Users/ahmetgorkemer/opt/anaconda3/lib/python3.9/site-packages/ruamel/yaml/constructor.py", line 119, in get_single_data
    node = self.composer.get_single_node()
  File "/Users/ahmetgorkemer/opt/anaconda3/lib/python3.9/site-packages/ruamel/yaml/composer.py", line 76, in get_single_node
    document = self.compose_document()
  File "/Users/ahmetgorkemer/opt/anaconda3/lib/python3.9/site-packages/ruamel/yaml/composer.py", line 102, in compose_document
    self.parser.get_event()
  File "/Users/ahmetgorkemer/opt/anaconda3/lib/python3.9/site-packages/ruamel/yaml/parser.py", line 168, in get_event
    self.current_event = self.state()
  File "/Users/ahmetgorkemer/opt/anaconda3/lib/python3.9/site-packages/ruamel/yaml/parser.py", line 253, in parse_document_end
    token = self.scanner.peek_token()
  File "/Users/ahmetgorkemer/opt/anaconda3/lib/python3.9/site-packages/ruamel/yaml/scanner.py", line 188, in peek_token
    self.fetch_more_tokens()
  File "/Users/ahmetgorkemer/opt/anaconda3/lib/python3.9/site-packages/ruamel/yaml/scanner.py", line 288, in fetch_more_tokens
    return self.fetch_value()
  File "/Users/ahmetgorkemer/opt/anaconda3/lib/python3.9/site-packages/ruamel/yaml/scanner.py", line 657, in fetch_value
    raise ScannerError(
ruamel.yaml.scanner.ScannerError: mapping values are not allowed here
  in "<unicode string>", line 28, column 66:
     ... le" content="{&quot;groups&quot;: [], &quot;environmentKey&quot; ... 
                                         ^ (line: 28)

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