CRISPRCasFinder is an updated, improved, and integrated version of CRISPRFinder and CasFinder.

The related publication is available at: https://doi.org/10.1093/nar/gky425

Further information are available at: https://crisprcas.i2bc.paris-saclay.fr.

A more complete User Manual is available at the following link: https://crisprcas.i2bc.paris-saclay.fr/Home/DownloadFile?filename=CRISPRCasFinder_Viewer_manual.pdf.

If you want to try CRISPRCasFinder without installing dependencies, The standalone version is also available as singularity container:

singularity run shub://dcouvin/CRISPRCasFinder:4.2.18 -def General -cas -i my_sequence.fasta -keep

or download the image locally, and optionally rename it, then run it

singularity pull --name CRISPRCasFinder shub://dcouvin/CRISPRCasFinder:4.2.18 
./CRISPRCasFinder -def General -cas -i my_sequence.fasta -keep

For more information about singularity containers: https://www.sylabs.io/docs/