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Contributors

ab5424 avatar andrew-s-rosen avatar comprhys avatar danielzuegner avatar depend-a-lot-bot[bot] avatar dependabot[bot] avatar esoteric-ephemera avatar github-actions[bot] avatar gpetretto avatar hrushikesh-s avatar jageo avatar janosh avatar jiqi535 avatar jmmshn avatar jonathanschmidt1 avatar matthewkuner avatar mattmcdermott avatar mjwen avatar mkhorton avatar naik-aakash avatar nwinner avatar quantumchemist avatar rdguha1995 avatar rkingsbury avatar tpurcell90 avatar utf avatar zhuoying avatar

atomate2's Issues

Jobs & their compute configuration

Completition flag

  • RELAX job
  • STATIC jobs on displaced structures (includes Supercell generator + Hiphive displacement generator)
  • collect structures & forces
  • fit FC using Hiphive
  • Quality control -- add more displacements, add more structures
  • renormalization
  • LTC shengBTE (Three Phonon)
  • LTC almaBTE (Four Phonon)
  • LTC phono3py
  • extract Phonon DOS & Bandstructure

Configuration flag

  • RELAX job: 1 GPU node with 4 procs
  • Supercell generator: 1 GPU node with 4 procs
  • Hiphive displacement generator: 1 GPU node with 4 procs
  • STATIC jobs on displaced structures: 1 GPU node with 4 procs
  • collect structures & forces: 1 GPU node with 4 procs
  • fit FC using Hiphive: 1 GPU node with 4 procs
  • Quality control -- add more displacements, add more structures
  • renormalization: 1 GPU node with 16 OMP_NUM_THREADS procs takes > 30 mins to complete, 4 GPU nodes with 16 OMP takes 17 mins, 4 CPU nodes with 16 OMP takes 11 mins, 1 CPU node with 16 OMP takes 24 mins.
  • LTC: shengbte_cmd: 'srun -N 4 -n 64 -c 16 --cpu_bind=cores ShengBTE (-N 2 -n 32 -c 16 Two nodes)
  • extract Phonon DOS & Bandstructure: 1 GPU node with 4 procs

VASP_CMD: srun -n 4 -c 32 --cpu_bind=cores -G 4 --gpu-bind=none vasp_std # this works for 1 GPU nodes & 4 procs to be used when performing STATIC calculation on a supercell with 1 1 1 KPOINTS, thus when using the GAMMA VASP mode
SHENGBTE_CMD: srun -n 4 -c 32 --cpu_bind=cores -G 4 --gpu-bind=none /global/homes/h/hrushi99/code/FourPhonon/ShengBTE 2>BTE.err >BTE.out

Unit tests

Write unit tests using assert feature for the following material systems:

  • GaAs
  • GaSb
  • ZnSe
  • AlAs
  • MgO
  • BaO
  • KCl
  • NaCl

unittesting will involve

  • relaxation energy
  • perturbed structures
  • static energies
  • residual forces
  • hiphive fitting rmse
  • Cv
  • F at 300K
  • grüneisen parameter
  • CTE
  • LTC using shengBTE
  • LTC using almaBTE
  • LTC using phono3py

Figures & text for Atomate2 paper

  • Phonon DOS
  • Phonon Bandstructure
  • F vs T
  • Renormalized Phonon Bandstructure as a function of Temp
  • Grüneisen parameter
  • CTE
  • LTC
  • NAC + LRC correction
  • Workflow diagram -- using Google diagram

TI renormalization

Implement TI renormalization scheme from Junsoo's new paper

  • Thermodynamic integration scheme

Cutoffs

rechecking the cutoff scheme

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