Team Members: Haiying Liu, Jiayin Zheng, Sanjana Moudgalya, Mian Li
Advisor: Prof. Eric Nyberg
All code for different parts of the project are present in separate branches of this repository.
- BioBERT: code using the https://github.com/dmis-lab/biobert-pytorch repository to make submissions for Yes/No and Factoid questions to the BioASQ Competition
- QAGNN: code using the https://github.com/michiyasunaga/qagnn/tree/main repository to adapt for BioASQ data from MedQA dataset
- SeqTagQA: code using the https://github.com/dmis-lab/SeqTagQA repository to generate the answewr for list type question
- LinkBERT: code using the https://github.com/hliu549/BioMedicalNLP/tree/LinkBERT repository to make submissions for Yes/No and Factoid questions to the BioASQ Competition
- External KG infusion: code using the https://github.com/hliu549/BioMedicalNLP/tree/kg_infusionrepository to infuse external KG and train downstream QA test