hjanime Goto Github PK

mango

chia pet analysis software

markdown-for-bio-scientists

Draft: presentation about Markdown basics and applications

megahit

MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph

memoir

Templates to publish well-formatted documents both in HTML and PDF formats

metagenomefeatures

R package for annotating metagenomic datasets with taxonomic information

metagenomeseq

Statistical analysis for sparse high-throughput sequencing

metagenomics-workshop

Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm

metagensense

A web application framework for analysis and visualization of High throughput Sequencing metagenomic data

metamaker

MetaMaker is a simple, user friendly application for generating known-content metagenomic datasets.

metamos

A metagenomic assembly pipeline for AMOS

metapassage

A Metagenomic Pipieline for Automated Simulations and Analysis of Gene Families (source code)

metapathways2

MetaPathways v2.0: A master-worker model for environmental Pathway/Genome Database construction on grids and clouds

metaseq

Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data

methylflow

Cell-specific methylation pattern reconstruction

mf

nimfa - A Python Library for Nonnegative Matrix Factorization Techniques

mia

MIA is an reference guided assembler for DNA reads as generated by recent sequencing technologies. It is designed to support unusual short reads like they come from ancient, fragmented DNA.

micca

Microbial Community Analysis

microbedb

Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI

microbiome

microbiome R package

microbiome_helper

An assortment of scripts to help process and automate various microbiome and metagenomic bioinformatic tools.

microrna-sequencing

Creation of a repository for microRNA-sequencing pipeline

mimrna

Useful functions to use with edgeR

mirspring

Pipeline scripts for creating a miRspring (miRNA sequence profiling) document.

miso

MISO

miso-scripts

For running and controlling miso

mlass

Machine Learning clASS

mlr

mlr: Machine Learning in R

mmseq

Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads

modmap

Tools for examining modified nucleobases

movapa