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mingz

mingz: An ultra-fast gzip file tools
mingz: An ultra-fast gzip file tool that supports multithreading, etc., is faster than both pigz and gzip in comprehensive testing

1. Install

(1) Building from source (Linux or Mac)

git clone https://github.com/hewm2008/MingZ.git
cd MingZ
make
cd bin
./mingz -h

2. Usage

	Usage: mingz  big1.fq *.fq
	Options:
		-i   <str>   input of text file or pipe
		-o   <str>   output of text file
		-t           number of threads [4]
		-c           write on standard output
		-d           decompress(no threads)
		-h           show help hewm2008[v1.10]

3. Example

3.1

	mingz  InA.fq  InB.fq  -o NewOutA.fq.gz   -o NewOutB.fq.gz 
	mingz *.fq   # will remove raw file out InA.fq.gz InB.fq.gz
	mingz  InA.fq  -t  10  # muti threads
	cat  InA.fq  | mingz  > NewOutA.fq.gz  ##    cat  InA.fq  | mingz  -o  NewOutA.fq.gz

3.2 decompress File

	mingz In.fq.gz -c -d  > new.Fq
	mingz -i In.Fa.gz -o  OutNew.fq  
	mingz *.gz -d   # will remove raw file

4. accuracy and efficiency

An ultra-fast fast >pigz > gzip ,see follows: test.png

5. License


This project is licensed under the MIT License - see the LICENSE file for details

6 Contact


mingz's People

Contributors

hewm2008 avatar

Stargazers

DuLab avatar Jiabin avatar  avatar  avatar Zhuoran Kuang avatar Gaorui Gong avatar KyleYu avatar apexone avatar  avatar sczh01 avatar qianche avatar Lulu Shi avatar Omega Alpha avatar johnsonz avatar Zhang Yixing avatar Xiaofei Zeng avatar zhangwenda avatar jinqiu wang avatar Gaorui Gong avatar  avatar Qionghou Li avatar ONT_HiFi_HiC avatar Chao Zheng avatar

Watchers

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