harmsm Goto Github PK

gpmap

A python API for analyzing and manipulating combinatorial genotype-phenotype maps

gpseer

A Python API that predicts missing data in sparsely sampled genotype-phenotype maps

gpvolve

A Python API for computing evolutionary paths across genotype-phenotype maps and clustering of genotype-phenotype maps.

guide-to-working-as-team-on-github

A quick guide to working as a team on Github

hermes

A stripped down, clean discord poll bot tailored for the classroom

hops_enrich-1

software for processing phage display data for machine learning with peplearn

imb-2016

talk given at 2016 IMB retreat

jquery-jslots

jQuery slot machine insanity! Turns any list into a slot machine (you provide the insanity)

kinetics_simulator

interactive notebooks for playing with simple Markov and Gillespie models for chemical reactions

lama

LocAlization Microscopy Analyzer

latticegpm-1

Python package for building fitness landscapes from protein lattice models

latticeproteins

Implements lattice models of proteins, and allows their evolution

latticeproteins-1

2d protein lattice model simulator in Python

ledsart

Software for controlling an LED light installation

library_simulator

python package for simulating random libraries made by an error-prone polymerase

likelihood

Library for fitting models using a likelihood framework.

linux-utilities

sundry useful bash/python tools

lovoalign

m63f-biophysics

scripts and data to reproduce biophysical investigation of S100A9/M63F

markov-kinetics-notebooks

notebook(s) allowing students to play with chemical kinetics encoded by markov models

math-atlas

Automatically Tuned Linear Algebra Software (ATLAS)

md-analysis-tools

scripts for analyzing molecular dynamics trajectories using VMD

mesh-networking

:globe_with_meridians: A Python library to help create and test flexible network topologies.

minimu9-ahrs

Program for reading data from the Pololu MinIMU-9 over I²C. Works on the Raspberry Pi and probably other embedded ARM Linux boards.

msmtools

Tools for estimating and analyzing Markov state models

mycroft-core

Mycroft Core, the Mycroft Artificial Intelligence platform.

ncbi-genome-download

Scripts to download genomes from the NCBI FTP servers

networkviewer

Interactive Network Graph Viewer using D3.js

networkx

Network Analysis in Python

one-dark-ui

Atom One dark UI theme