harmslab Goto Github PK
Name: Harms Lab @ University of Oregon
Type: Organization
Bio: Software projects created by members of the the Harms lab at the University of Oregon
Location: Eugene, OR
Name: Harms Lab @ University of Oregon
Type: Organization
Bio: Software projects created by members of the the Harms lab at the University of Oregon
Location: Eugene, OR
Takes 96-well plate reader data, converts to pandas dataframe, and allows for analysis/plotting of bacterial growth curves
Protocol and scripts for doing ancestral sequence reconstruction
map barcodes to full sequences from a high-throughput mapping experiment
Library for fitting models using a likelihood framework.
Temporary Jupyter Notebooks for scientific computing demos.
ensemble epistasis engine
tool for measuring ellipticity of cucurbituril macrocycles
A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.
Tutorial notebooks for the epistasis package hosted on Binder.
pipeline stitching together fasttree, examl, and lazarus/paml for phylogenetics and ancestral sequence reconstruction
Scripts and data for reproducing the analysis in "An experimental demonstration of ensemble epistasis in the lac repressor"
fast, lightweight dbscan implementation for peptide strings
A Python API for simulating flow cytometry data.
Simple SDS-PAGE/western blot gel quantification software.
A curated list of experimental genotype-phenotype maps from published literature in JSON format
template for setting up MD simulations in the Harms lab.
NetworkX for genotype-phenotype maps
A Python API for managing genotype-phenotype map data
A tool to predict missing data in sparsely sampled genotype-phenotype maps
A Python API for computing evolutionary paths across genotype-phenotype maps and clustering of genotype-phenotype maps.
Use machine learning to find rules for peptide binding
software for processing phage display data for machine learning with peplearn
Multi-user server for Jupyter notebooks
Python package for building fitness landscapes from protein lattice models
2d protein lattice model simulator in Python
python package for simulating random libraries made by an error-prone polymerase
package for fitting thermodynamic linkage models to experimental data
scripts and data to reproduce biophysical investigation of S100A9/M63F
Interactive Network Graph Viewer using D3.js
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.