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pythondatasciencehandbook

Jupyter Notebooks for the Python Data Science Handbook

pytorch-book

PyTorch tutorials and fun projects including neural talk, neural style, poem writing, anime generation

pyvcf

A Variant Call Format reader for Python.

relapsed_aml

Scripts for data analysis in relapsed AML study

reproduce_lucas_wflow

cfDNA_DELFI_LungCancer

rna-seq-analysis

RNAseq analysis notes from Tommy Tang

rnaseq-workflow

A repository for setting up a RNAseq workflow

sambamba

Tools for working with SAM/BAM data

scdeconv

scDeconv is an R Package to Deconvolve Bulk DNA Methylation Data with scRNA-seq Data in a Multi-omics Manner.

splicify

startbootstrap-resume

A Bootstrap 4 resume/CV theme created by Start Bootstrap

tools

tools for NGS analysis

uikit

A lightweight and modular front-end framework for developing fast and powerful web interfaces.

variationanalysis

This repository holds the companion project to Goby3, used to train and evaluate deep learning models to call variations. This repository contains the Matcha framework to help train and evaluate deep learning models trained with semi-simulation. See docs below for details.