haihuawang-hub Goto Github PK

go_enrichment

From DNA sequences to GO enrichment Fisher tests

haihua.github.io

Haihua Wang's website

kraken2

The second version of the Kraken taxonomic sequence classification system

lepmap2_workflow

Pipeline for linkage map construction from NGS data

machine-learning-yearning-cn

Machine Learning Yearning 中文版 - 《机器学习训练秘籍》 - Andrew Ng 著

machine_learning_code_implementation

Mathematical derivation and pure Python code implementation of machine learning algorithms.

mcscanx

MCScanX: Multiple Collinearity Scan toolkit X version. The most popular synteny analysis tool in the world!

memo

学习笔记：我的第一个github仓库

metagenome

Metagenome analysis pipeline

metagenomics-pipeline

Metagenomics Pipeline

metagenomics-workshop

metagenomics_workflows

Repository for storing metagenomics workflows

metatranscriptomics_workflow

Pipeline for analyses of bacterial metatranscriptomics data

metawrap

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

mfuzz_rnaseq

A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.

microfisher-fungal-profiling

Fungal species-level taxonomic profiling method for metagenomes and metatranscriptomes using multiple short hypervariable rRNA regions

mirnaseq-analysis

Analyze single-cell miRNA sequencing data from HL-60 cells along a 7-day time-course of ATRA treatment.

ngs-analysis

二代测序数据分析

ngs-data-processing

ngs_data_processing

Tool set for processing fasta/fastq/table formated data. Usually they are perl scripts.

nst

Normalized Stochasticity Ratio in community assembly

pathview_workflow

Quick workflow for KEGG pathways visualization in R using Pathview

position_statements

Successful Job Applications and Grants

prodigal

Prodigal Gene Prediction Software

psort-ii

ribodetector

Accurate and rapid RiboRNA sequences Detector based on deep learning

rna-seq_denovo_workflow

Pipeline for transcriptome de novo assembly

rna-seq_mapping_workflow

Pipeline for RNAseq data analysis based on reference genome

rnaseq-rrna-identification-approach2

rnaseq_tc_contrasts

Workflow for detecting differences between conditions in RNA_seq time-course experiment