This repo contains, in its wiki, tables of bioimage-analysis software. The tables indicate the degree of reproducibility supported by the software.

For a more complete list of bioimage-analysis software that included plugins, libraries, languages, etc please see http://biii.eu/

Relevant open access paper in The EMBO Journal (2021): https://doi.org/10.15252/embj.2020105889

Online discussion related to that paper: https://forum.image.sc/t/how-to-avoid-image-data-mishandling-and-misconducts-a-commentary/