gwastro / pycbc-inference-paper Goto Github PK

I use the script in run_files and get "gw150914_inference.hdf" file,
but it is not same with "gw150914_posteriors_thinned.hdf".

Could you introduce the method of how to thinned the posterior samples?

Is it possible to run the code using the latest pycbc release 1.13.5? Tried to change the import pycbc.io.inference_hdf.InferenceFile in 1.12.3 to pycbc.infererence.io.base_hdf.BaseInferenceFile, but it didn't work, giving the error messages: TypeError: Can't instantiate abstract class BaseInferenceFile with abstract methods read_raw_samples, write_posterior, etc.

Hello, I use the docker version, but get this error, no MKL.

(pycbc-software) [pycbc@24f913201669 GW151226]$ ls
extract_independent_samples.sh gw151226_inference.ini run_pycbc_inference_gw151226.sh
(pycbc-software) [pycbc@24f913201669 GW151226]$ pwd
/home/pycbc/pycbc-inference-paper/run_files/GW151226
(pycbc-software) [pycbc@24f913201669 GW151226]$ bash run_pycbc_inference_gw151226.sh
1135136340
1135136356
1135136238
1135137262
/home/pycbc/pycbc-software/lib/python2.7/site-packages/h5py/init.py:36: FutureWarning: Conversion of the second argument of issubdtype from float to np.floating is deprecated. In future, it will be treated as np.float64 == np.dtype(float).type.
from ._conv import register_converters as _register_converters
2019-06-03 16:42:42,073 Using seed 12
Traceback (most recent call last):
File "/home/pycbc/pycbc-software/bin/pycbc_inference", line 4, in
import('pkg_resources').run_script('PyCBC==1.12.3', 'pycbc_inference')
File "/home/pycbc/pycbc-software/lib/python2.7/site-packages/pkg_resources/init.py", line 654, in run_script
self.require(requires)[0].run_script(script_name, ns)
File "/home/pycbc/pycbc-software/lib/python2.7/site-packages/pkg_resources/init.py", line 1434, in run_script
exec(code, namespace, namespace)
File "/home/pycbc/pycbc-software/lib/python2.7/site-packages/PyCBC-1.12.3-py2.7-linux-x86_64.egg/EGG-INFO/scripts/pycbc_inference", line 195, in
ctx = scheme.from_cli(opts)
File "/home/pycbc/pycbc-software/lib/python2.7/site-packages/PyCBC-1.12.3-py2.7-linux-x86_64.egg/pycbc/scheme.py", line 262, in from_cli
ctx = MKLScheme()
File "/home/pycbc/pycbc-software/lib/python2.7/site-packages/PyCBC-1.12.3-py2.7-linux-x86_64.egg/pycbc/scheme.py", line 149, in init
raise RuntimeError("Can't find MKL libraries")
RuntimeError: Can't find MKL libraries
(pycbc-software) [pycbc@24f913201669 GW151226]$