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Kolmogorov Receptor Signatures 1.0 (KRS1)

KRS1 uses Kolmogorov-Zurbenko adaptive filtered [1] Fourier transform on structural alignments aiming to uncover distinct signatures. The software is currently in a highly experimental alpha phase. Example properties plotted in the frequency domain across an alignment include:

  • amino acid mass
  • amino acid volume
  • average hydrophobicity
  • phi and psi

Empty positions in an alignment (-) are currently represented as 0.0.

To test the software, create a virtual environment. Then run

pip install -r requirements.txt

python main.py

*Requires an internet connection for initial Alphafold model download and phi psi angle calculation.

Interaction

An interactive text UI will start to guide plot generation. To generate a plot, enter a column name/receptor name from the alignment file, ie. 'alignments/aminergic_alignment.txt' in the demo. Closing a plot will allow for generating the next plot.

Reference

  1. https://wires.onlinelibrary.wiley.com/doi/10.1002/wics.71

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