Golang implementation of KD tree (https://en.wikipedia.org/wiki/K-d_tree) data structure
Use go tool to install the package in your packages tree:
go get github.com/hongshibao/go-kdtree
Then you can use it in import section of your Go programs:
import "github.com/hongshibao/go-kdtree"The package name is kdtree.
First you need to implement the Point interface:
type Point interface {
// Return the total number of dimensions
Dim() int
// Return the value X_{dim}, dim is started from 0
GetValue(dim int) float64
// Return the distance between two points
Distance(p Point) float64
// Return the distance between the point and the plane X_{dim}=val
PlaneDistance(val float64, dim int) float64
}Here is an example of implementing Point interface with square of Euclidean distance as the Distance definition:
type EuclideanPoint struct {
Point
Vec []float64
}
func (p *EuclideanPoint) Dim() int {
return len(p.Vec)
}
func (p *EuclideanPoint) GetValue(dim int) float64 {
return p.Vec[dim]
}
func (p *EuclideanPoint) Distance(other Point) float64 {
var ret float64
for i := 0; i < p.Dim(); i++ {
tmp := p.GetValue(i) - other.GetValue(i)
ret += tmp * tmp
}
return ret
}
func (p *EuclideanPoint) PlaneDistance(val float64, dim int) float64 {
tmp := p.GetValue(dim) - val
return tmp * tmp
}Now you can create KD-tree from a list of points and get a list of k nearest neighbours for a target point:
func NewEuclideanPoint(vals ...float64) *EuclideanPoint {
ret := &EuclideanPoint{}
for _, val := range vals {
ret.Vec = append(ret.Vec, val)
}
return ret
}
func main() {
p1 := NewEuclideanPoint(0.0, 0.0, 0.0)
p2 := NewEuclideanPoint(0.0, 0.0, 1.0)
p3 := NewEuclideanPoint(0.0, 1.0, 0.0)
p4 := NewEuclideanPoint(1.0, 0.0, 0.0)
points := make([]Point, 0)
points = append(points, p1)
points = append(points, p2)
points = append(points, p3)
points = append(points, p4)
tree := NewKDTree(points)
targetPoint := NewEuclideanPoint(0.0, 0.0, 0.1)
neighbours := tree.KNN(targetPoint, 2)
for idx, p := range neighbours {
fmt.Printf("Point %d: (%f", idx, p.GetValue(0))
for i := 1; i < p.Dim(); i++ {
fmt.Printf(", %f", p.GetValue(i))
}
fmt.Println(")")
}
}The returned k nearest neighbours are sorted by their distance with the target point.
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