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This project forked from esmci/cime

Common Infrastructure for Modeling the Earth

License: Other

CMake 1.49% Gnuplot 0.01% Python 14.67% Shell 1.24% HTML 0.01% Makefile 0.71% Perl 6.72% Fortran 53.50% NCL 0.24% C++ 0.27% C 18.96% M4 0.44% TeX 0.20% Awk 0.03% CSS 0.26% NewLisp 0.01% Pascal 0.10% Roff 1.09% Assembly 0.01% PHP 0.07%

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cime's Issues

Parallel I/O with 16 processor test fails

from make check:

FAIL: run_par_test.sh
============================================================================
Testsuite summary for netCDF 4.6.3
============================================================================
# TOTAL: 72
# PASS:  71
# SKIP:  0
# XFAIL: 0
# FAIL:  1
# XPASS: 0
# ERROR: 0
============================================================================
See nc_test4/test-suite.log
Please report to [email protected]
============================================================================
Makefile:2043: recipe for target 'test-suite.log' failed
make[3]: *** [test-suite.log] Error 1
make[3]: Leaving directory '/home/gregorylemieux/Work/netcdf-c-4.6.3/nc_test4'
Makefile:2149: recipe for target 'check-TESTS' failed
make[2]: *** [check-TESTS] Error 2
make[2]: Leaving directory '/home/gregorylemieux/Work/netcdf-c-4.6.3/nc_test4'
Makefile:2743: recipe for target 'check-am' failed
make[1]: *** [check-am] Error 2
make[1]: Leaving directory '/home/gregorylemieux/Work/netcdf-c-4.6.3/nc_test4'
Makefile:695: recipe for target 'check-recursive' failed
make: *** [check-recursive] Error 1

From nc_test4/test-suite.log:

   netCDF 4.6.3: nc_test4/test-suite.log
===========================================

# TOTAL: 72
# PASS:  71
# SKIP:  0
# XFAIL: 0
# FAIL:  1
# XPASS: 0
# ERROR: 0

.. contents:: :depth: 2

FAIL: run_par_test
==================


Testing MPI parallel I/O with various other mode flags...

*** Testing illegal mode combinations
*** Testing create + MPIO + fletcher32
*** Testing create + MPIO + deflation
ok.
*** Tests successful!

Testing MPI parallel I/O without netCDF...

*** Testing basic MPI file I/O.
*** testing file create with parallel I/O with MPI...ok.
*** Tests successful!

Testing very simple parallel I/O with 4 processors...

*** tst_parallel testing very basic parallel access.
*** tst_parallel testing whether we can create file for parallel access and write to it...ok.
*** Tests successful!

Testing simple parallel I/O with 16 processors...
--------------------------------------------------------------------------
There are not enough slots available in the system to satisfy the 16 slots
that were requested by the application:
  ./tst_parallel3

Either request fewer slots for your application, or make more slots available
for use.
--------------------------------------------------------------------------
FAIL run_par_test.sh (exit status: 1)

This thread might be relevant: Unidata/netcdf-c#932 (comment)

NetCDF-Fortran build from NetCDF-C bootstrap not building?

The following command:
make build-netcdf-fortran
Results in the following error:

Downloading and Building NetCDF-Fortran
chmod u+x /home/gregorylemieux/Work/netcdf-c-4.6.3/postinstall.sh
sh -c "/home/gregorylemieux/Work/netcdf-c-4.6.3/postinstall.sh -t autotools -a build"
/home/gregorylemieux/Work/netcdf-c-4.6.3/postinstall.sh: line 23: /dev/null1: Permission denied
ERROR: 'git' is required to install netcdf-fortran automatically
through this method. Please reinstall git and try again.
Makefile:1166: recipe for target 'build-netcdf-fortran' failed
make: *** [build-netcdf-fortran] Error 1

I think this has to do with admin privleges to download? I think the git error is a red herring. Will try sudo make build-netcdf-fortran

Run regression test: http://esmci.github.io/cime/users_guide/porting-cime.html

was not downloading the necessary input data from cesm due to netcdf problem

NetCDF-Fotran (in lieu of boostrap option from NetCDF-C) is not linking to NETCDF-C

make check is failing on gcc

Re-Install NetCDF-C

fortran bootstrap is failing on the gcc commands. Not sure if I want to bother submitting issue in netcdf-c library. Switched to installing the stand-alone NetCDF-Fortran, but that's not working do to what appears to be problems with NetCDF-C install (see #5). So I'm re-installing NetCDF.

Figure out how to reset the `.configure` run without nuking the whole directory

I've taken to removing the whole netcdf install folder each time I iterate on ./configure. I don't think I need to be this draconian, but I'm not sure how else to clear the configuration. Haven't looked at the configure command for help yet though.

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