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GoogleCodeExporter avatar GoogleCodeExporter commented on June 24, 2024
Program quits at line 352. But I can't debug that, because I am not familiar 
with that code.

Original comment by [email protected] on 1 Dec 2011 at 12:19

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GoogleCodeExporter avatar GoogleCodeExporter commented on June 24, 2024
The problem occurs where revcomp changes the size of the buffer for the reverse 
read's reverse compliment.  Since the reverse reads are changing in size, this 
realloc() is getting exercised, and it doesn't quite work. 

Original comment by [email protected] on 4 Dec 2011 at 4:39

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GoogleCodeExporter avatar GoogleCodeExporter commented on June 24, 2024
A colleague of mine friendly fixed that problem exchanging lines 351 and 352 
with:
                d->seq.s=(char *) realloc(s->seq.s, (d->seq.a=(s->seq.n)*1000));
                d->qual.s=(char *) realloc(s->qual.s, (d->qual.a=(s->qual.n)*1000));
She said its a little bit dirty, but it works fine for me!

Original comment by [email protected] on 6 Dec 2011 at 6:36

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GoogleCodeExporter avatar GoogleCodeExporter commented on June 24, 2024
[deleted comment]

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GoogleCodeExporter avatar GoogleCodeExporter commented on June 24, 2024
[deleted comment]

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GoogleCodeExporter avatar GoogleCodeExporter commented on June 24, 2024
Fix Committed revision 260.

Original comment by [email protected] on 11 Jan 2012 at 5:47

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