Comments (6)
Program quits at line 352. But I can't debug that, because I am not familiar
with that code.
Original comment by [email protected]
on 1 Dec 2011 at 12:19
from ea-utils.
The problem occurs where revcomp changes the size of the buffer for the reverse
read's reverse compliment. Since the reverse reads are changing in size, this
realloc() is getting exercised, and it doesn't quite work.
Original comment by [email protected]
on 4 Dec 2011 at 4:39
from ea-utils.
A colleague of mine friendly fixed that problem exchanging lines 351 and 352
with:
d->seq.s=(char *) realloc(s->seq.s, (d->seq.a=(s->seq.n)*1000));
d->qual.s=(char *) realloc(s->qual.s, (d->qual.a=(s->qual.n)*1000));
She said its a little bit dirty, but it works fine for me!
Original comment by [email protected]
on 6 Dec 2011 at 6:36
from ea-utils.
[deleted comment]
from ea-utils.
[deleted comment]
from ea-utils.
Fix Committed revision 260.
Original comment by [email protected]
on 11 Jan 2012 at 5:47
from ea-utils.
Related Issues (20)
- sam-stats fails to properly deduce unmapped reads and snp (ins/del) rate HOT 6
- --max-ns 0 does not seem to work, still getting reads with Ns HOT 6
- Add "make clean" target to Makefile HOT 3
- fastq-mcf: Allow merging multiple FASTQ input files to one (or two in case of paired-end) cleaned fastq file HOT 4
- sam-stats doesn't support -o and -O option HOT 3
- Incorrect total reads when using FIFO HOT 2
- fastq-mcf: invalid adapter file ==> Floating point exception HOT 1
- The gtf2bed script generate bed with wrong chrStart and chrEnd coordinates for plus strand HOT 4
- Limit on the number of files it can handle HOT 1
- fastq-multx when barcode is in header between # and / symbols? HOT 7
- fastq-multx supporting sequence in header HOT 1
- Compilation on Mac HOT 1
- Giant FASTQ support in stats HOT 3
- Wrong number (/ counter / calculation) in summary statistics of fastq-mcf HOT 2
- fastq-mcf not working correctly on ubuntu 14.04 HOT 9
- error message: "fastq-mcf has stopped working" HOT 4
- gtf2bed wrong output. HOT 1
- compilation error because sparsehash/sparse_hash_map is not found HOT 1
- "fastq-mcf has stopped working"
- Patches for porting ea-utils to other POSIX platforms + warnings clean-up HOT 1
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