Comments (2)
It is a start codon spanning a splice site. We should fix this soon/
Original comment by [email protected]
on 28 May 2013 at 5:08
from ea-utils.
There's a bug in the gtf. Should be start_codon, and stop_codon ... not with
a space in the name. Also there's a bunch of spaces, instead of tabs in some
lines of the example.
Adjust the start_codon and stop_codon lines so that they encompass the codon
properly and this will go away.
OF course, the program could take into account the cds... and that would fix it
too. But I think it's fine to require valid start/stop codons.
See example here http://www.gencodegenes.org/gencodeformat.html
Original comment by [email protected]
on 12 Aug 2013 at 1:37
- Changed state: Invalid
from ea-utils.
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