Related Issues (20)
- Compute coverage statistics at gene level using the union transcript HOT 1
- Compute coverage statistics at panel level HOT 1
- Parametrize the configuration file HOT 1
- Automate test data download by making it available in OpenCGA
- Stress test: run the analysis on a whole genome file HOT 2
- Add GRCh38 support to wrapper script HOT 6
- Add whole genome metric of coverage uneveness
- Report not sequenced regions HOT 1
- Support NonN regions bed file for the whole genome coverage analysis HOT 1
- Add statistics at chromosome level for whole genome and exome regions HOT 2
- Coverage pipeline usage of different chromosome identifiers conventions HOT 1
- Add support for chromosome chr prefix on cellbase helper HOT 1
- support for multiple panels HOT 2
- Uneveness of coverage metric is not being weighted and the result might be biased HOT 4
- Segmentation fault for GRCh38 coverage analysis HOT 5
- Calculate standard deviation at several genomic levels HOT 1
- Error when all transcripts are filtered out HOT 1
- SystemError: Input gene list is not correct HOT 3
- Requirements meeting HOT 9
- Include a parametrizable number of bases up and downstream of each exon HOT 1
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