genomicsengland Goto Github PK

acgs_gel_api_workshop

Repository of code for use in the ACGS-Gel Workshop

af_letter_distribution_dataset

Scripts to generate and QC the distribution list for the additional findings letter June 2021

agg_combininig_queries

ansible-openshift

bertha-gitlab-repo-test

this repo is under work to test github to gitlab migration

brs_icd10_extract_and_parse

Extract and parse ICD10 data from Electronic Health Records

brs_survival

Survival analysis with python

calypso

cancer-phamacogenomics-data-example

cdt-docker

CDT Docker Images

cll-pilot-data-processing

scripts to generate cll research dataset

cloudos-nf-testing

throwaway behaviour tests of cloudos nextflow

confluence_genomics_england_python_3

Confluence Python API - Genomics England fork for Python 3 Compatibility

covid19_genomicc_avt_analysis

dbs-custom-cohorts

ddl-genie

Guess DDL from tabular data

downtime

dq_queryresolution

easybuild-easyconfigs

A collection of easyconfig files that describe which software to build using which build options with EasyBuild.

eslint-config-react

This is a copy of Zone Digital's eslint-config-react.

eslint-config-zone

copy of Zone Digital's eslint-config-zone

ethnicity_store

Process to extract ethnicity data from various sources and allign in single location

extract_single_participant_data

Extract single participant's data from research release

frontend

Mono repo for Zone's frontend team.

gel-coverage

gel-htsget

gel-models-user-doc

gel2decipher

Prototype to send variants from Genomics England to Decipher API

gel_cohort_overlap

gelreportmodels

This has been archived and active development transferred to gitlab.com/genomicsengland/gelreportmodels/GelReportModels