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Repository to place example notebooks for Deep Learning applications with TensorFlow and Earth Engine.
In notebook: streamflow_prediction_lstm/ee_streamflow_prediction_lstm.ipynb,
calculation of rmse should be changed from
rmse = np.mean(np.sqrt(np.power((y_test-y_pred),2)))
to
rmse = np.sqrt(np.mean(np.power((y_test-y_pred),2)))
in rmse, we calculate error in our predictions, then we square those errors, and then we get mean of squared errors, then finally we get square root of resulted mean.
@KMarkert Thank you for this excellent tutorial! I was able to follow through from the beginning until the section Creating an EEified model when I ran into an error Dst tensor is not initialized.
I googled and found that this error likely occurred because the GPU is out of memory. However, I am not sure how to resolve this issue. Any advice will be greatly appreciated.
Code
# Put the EEified model next to the trained model directory.
EEIFIED_DIR = 'gs://{}/eeified_{}/'.format(BUCKET,MODEL_NAME)
# change to your specific project
# PROJECT = 'ee-sandbox'
PROJECT = ' api-project-141292844612'
# # You need to set the project before using the model prepare command.
!earthengine set_project {PROJECT}
!earthengine --no-use_cloud_api model prepare --source_dir {TF_DIR} --dest_dir {EEIFIED_DIR} --input {input_dict} --output {output_dict}
Output
Running command using Cloud API. Set --no-use_cloud_api to go back to using the API
Successfully saved project id
Traceback (most recent call last):
File "/usr/local/lib/python3.6/dist-packages/tensorflow_core/python/client/session.py", line 1365, in _do_call
return fn(*args)
File "/usr/local/lib/python3.6/dist-packages/tensorflow_core/python/client/session.py", line 1350, in _run_fn
target_list, run_metadata)
File "/usr/local/lib/python3.6/dist-packages/tensorflow_core/python/client/session.py", line 1443, in _call_tf_sessionrun
run_metadata)
tensorflow.python.framework.errors_impl.InternalError: 2 root error(s) found.
(0) Internal: Dst tensor is not initialized.
[[{{node RestoreV2}}]]
(1) Internal: Dst tensor is not initialized.
[[{{node RestoreV2}}]]
[[GroupCrossDeviceControlEdges_0/StatefulPartitionedCall_2/Identity_212/_438]]
0 successful operations.
0 derived errors ignored.
During handling of the above exception, another exception occurred:
Traceback (most recent call last):
File "/usr/local/bin/earthengine", line 8, in <module>
sys.exit(main())
File "/usr/local/lib/python3.6/dist-packages/ee/cli/eecli.py", line 92, in main
tf.app.run(_run_command, argv=sys.argv[:1])
File "/usr/local/lib/python3.6/dist-packages/tensorflow_core/python/platform/app.py", line 40, in run
_run(main=main, argv=argv, flags_parser=_parse_flags_tolerate_undef)
File "/usr/local/lib/python3.6/dist-packages/absl/app.py", line 299, in run
_run_main(main, args)
File "/usr/local/lib/python3.6/dist-packages/absl/app.py", line 250, in _run_main
sys.exit(main(argv))
File "/usr/local/lib/python3.6/dist-packages/ee/cli/eecli.py", line 81, in _run_command
dispatcher.run(args, config)
File "/usr/local/lib/python3.6/dist-packages/ee/cli/commands.py", line 327, in run
self.command_dict[vars(args)[self.dest]].run(args, config)
File "/usr/local/lib/python3.6/dist-packages/ee/cli/commands.py", line 327, in run
self.command_dict[vars(args)[self.dest]].run(args, config)
File "/usr/local/lib/python3.6/dist-packages/ee/cli/commands.py", line 1830, in run
local_model_dir, tag, in_spec, out_spec, vars_path)
File "/usr/local/lib/python3.6/dist-packages/ee/cli/commands.py", line 1746, in _make_rpc_friendly
meta_graph = tf.saved_model.load(sesh, [tag], model_dir)
File "/usr/local/lib/python3.6/dist-packages/tensorflow_core/python/util/deprecation.py", line 324, in new_func
return func(*args, **kwargs)
File "/usr/local/lib/python3.6/dist-packages/tensorflow_core/python/saved_model/loader_impl.py", line 269, in load
return loader.load(sess, tags, import_scope, **saver_kwargs)
File "/usr/local/lib/python3.6/dist-packages/tensorflow_core/python/saved_model/loader_impl.py", line 423, in load
self.restore_variables(sess, saver, import_scope)
File "/usr/local/lib/python3.6/dist-packages/tensorflow_core/python/saved_model/loader_impl.py", line 377, in restore_variables
saver.restore(sess, self._variables_path)
File "/usr/local/lib/python3.6/dist-packages/tensorflow_core/python/training/saver.py", line 1290, in restore
{self.saver_def.filename_tensor_name: save_path})
File "/usr/local/lib/python3.6/dist-packages/tensorflow_core/python/client/session.py", line 956, in run
run_metadata_ptr)
File "/usr/local/lib/python3.6/dist-packages/tensorflow_core/python/client/session.py", line 1180, in _run
feed_dict_tensor, options, run_metadata)
File "/usr/local/lib/python3.6/dist-packages/tensorflow_core/python/client/session.py", line 1359, in _do_run
run_metadata)
File "/usr/local/lib/python3.6/dist-packages/tensorflow_core/python/client/session.py", line 1384, in _do_call
raise type(e)(node_def, op, message)
tensorflow.python.framework.errors_impl.InternalError: 2 root error(s) found.
(0) Internal: Dst tensor is not initialized.
[[{{node RestoreV2}}]]
(1) Internal: Dst tensor is not initialized.
[[{{node RestoreV2}}]]
[[GroupCrossDeviceControlEdges_0/StatefulPartitionedCall_2/Identity_212/_438]]
0 successful operations.
0 derived errors ignored.
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