Managed with chezmoi. Check out the blog post I wrote about it.
Common chezmoi commands
# edit a file
chezmoi edit ~/.zshrc
# see the change that would be applied
chezmoi diff
# apply the change
chezmoi apply
# change to the chezmoi directory to commit changes
chezmoi cd
Managed with vim-plug
Common vim-plug commands
" install plugins
:PlugInstall
" remove plugins no longer in .vimrc
:PlugClean