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This project forked from automl/auto-pytorch
Automatic architecture search and hyperparameter optimization for PyTorch
License: Apache License 2.0
Shell 0.06%
Python 99.90%
Dockerfile 0.04%
auto-pytorch's Introduction
- I work as Academic Staff Member at Bioinformatics, Institute for Biochemistry and Biology at Universtat Potsdam(UP) and Group ๐ฉ๐ช
- I work at the interface of both academics as well as developing applications from client side rendering.
- You can contact me at [email protected]
- If you want to contact me on Gmail, you can use [email protected]
- Communicative, approachable, motivated, task and solution oriented, time responsive, and initiative taker.
- I am very pro-active in making communication and upskilling on emerging trends.
- Proficient in developing new approaches for code development.
- Prefer onsite work but also open to work in a hybrid environment.
- Active time and project based approaches and solving limitations.
- Voracious reader of language model implementations language-models
- Curriculum vitae here: Covering Letter Curriculum Vitae, Scopus, ORCID, and Web of Science
- Employers references Previous Employers.
- Open to collaboration on Bioinformatics, Deep Learning, Generative AI, and DevOPs.
- Very collaborative and open to supporting those who support me.
- genomes, transcriptomes, organelle, metagenomes and metatranscriptomes, phylogenomes.
- plant, bacterial and fungal.
- Illumina, PacBio, Oxford Nanopore, PacBioHifi, HiC
- Python, R, Ruby, Awk, Shell, Nushell, Nextflow, Snakemake, MATLAB
Deep Learning, RAG, Language Models and Graphs.
- PyTorch, Tensorflow, CatBoost, XGBoost, Sklearn, Keras, LightGBM and other deep learning libraries.
- Python, R, MATLAB, learning Julia, learning graphsAPI
- Git,Docker,Kubernetes, Terraform for container orchestration.
- Shell, NuShell, Awk, Ruby, Python
- GitKraken and Tower for code management.
- PBS and SLURM as job scheduler
- Application deployment using Heroku
- Docker Docker applications
- Ruby on Rails, Streamlit, Shiny, Django, BootStrap, Julia, HTML, Javascript
- Markdown, ReadTheDocs, MkDocs, Jekyll, GitBook, jinja and jinja2, jq, yq
Name |
Description |
URL |
streamlit-pacbiohifi |
pacbiohifi sequencing information |
streamlit-pacbiohifi |
streamlit-Univeristat-Potsdam |
web application for Universitat Potsdam |
slurm-applicator |
Name |
Description |
URL |
tairaccession |
python package for interacting with tair |
tairaccession |
graphanalyzer |
python package for graph alignment tools |
graphanalyzer |
rnaprocessor |
python package for sequence based machine learning |
rnaprocessor |
protein-annotator |
python package for genome-protein alignments |
protein-annotator |
ontologyanalyzer |
python package ontologies using the semantic web |
ontologyanalyzer |
Nname |
Description |
URL |
evoseq |
genome annotation visualization, phylogeny from protein to genome alignments |
evoseq, subfunction genomevisual |
auto-pytorch's People