gauravcodepro,Gaurav,github

I work as Academic Staff Member at Bioinformatics, Institute for Biochemistry and Biology at Universtat Potsdam(UP) and Group 🇩🇪
I work at the interface of both academics as well as developing applications from client side rendering.
You can contact me at [email protected]
If you want to contact me on Gmail, you can use [email protected]
Communicative, approachable, motivated, task and solution oriented, time responsive, and initiative taker.
Pro-active in making communication and upskilling on emerging trends.
Proficient in developing new approaches for code development and have been coding for more than 14 years.
Prefer onsite work but also open to work in a hybrid environment.
Active time and project based approaches and solving limitations.
Voracious reader of language model implementations language-models
Curriculum vitae here: Covering Letter Curriculum Vitae, Scopus, ORCID, and Web of Science
Employers references Previous Employers.
Open to collaboration on Bioinformatics, Deep Learning, Generative AI, and DevOPs.
Very collaborative and open to supporting those who support me.
Not attached to any specific programming language and I select the programming language according to the work specifics.
Dont waste your time if i havent talked or even talked once in years, i dont even remember your face.
All code and ideas concieved by me unless specified.

Bioinformatics

Plant, bacterial and fungal genomes, transcriptomes, organelle, metagenomics and phylogenomics.
Illumina, PacBio, Oxford Nanopore, PacBioHifi, HiC
Data Analysis Programming specifics: Python, R, Ruby, Awk, Shell, Nextflow, Snakemake, MATLAB, Julia
Web Development Programming specifics: Python, Javascript, Ruby on Rails, Django, HTML and CSS.

Deep Learning, RAG, Language Models and Graphs.

PyTorch, Tensorflow, CatBoost, XGBoost, Sklearn, Keras, LightGBM, fastai and others.
Data Analysis Programming specifics: Python, R, MATLAB, learning Julia and graphsAPI
Web Development Programming specifics: Python, Javascript, Ruby on Rails, Django, HTML and CSS, Julia

DevOPs

Git,GitKraken,Docker,Kubernetes,Terraform for code management and container orchestration.
Programming specifics: Shell, NuShell, Awk, Python
PBS and SLURM as job scheduler
Heroku and Docker for application deployment

Documentation

Web Develpoment

Programming specifics: Ruby on Rails, Streamlit, Python Shiny and ShinyExpress, Django, BootStrap, Julia, HTML, Javascript
Format: jinja and jinja2, jq, yq

Streamlit: Streamlit Applications and Streamlit Community

Name	Description	URL
streamlit-pacbiohifi	pacbiohifi sequencing information	streamlit-pacbiohifi
streamlit-Univeristat-Potsdam	web application for Universitat Potsdam	slurm-applicator
streamlit-ontology-graphs	analyzing arabidopsis ontologies and plant obo	ontology-graphs
streamlit-metabolic-json	analyzing BIGG metabolic models	metabolic-app
streamlit-metabolic-analyzer	API to BIGG database models	metabolic-analyzer

Ruby Gems: Ruby gems, Ruby app and Ruby Community: released and development version

Name	Description	URL
devopsutils	devops system configuration	devops_system_profiler
ruby_template_creator	ruby templating	ruby template creator
fasta_tokenizer	fasta tokenizer and motif indexer	fasta_tokenizer
panacheextract	snp extractor	panacheextract
fluxmodels	flux models	fluxmodels
protalign	protein alignment analyzer	protein-alignment-gem and proteinmultialign
pacbiohifi-analyzer	pacbio hifi data from reads to graphs	pacbiohifi-analyzer

Python Package: Python Packages and Python Community: building development release version

Name	Description	URL
tairaccession	python package for interacting with tair	tairaccession
graphanalyzer	python package for graph alignment tools	graphanalyzer
rnaprocessor	python package for sequence based machine learning	rnaprocessor
protein-annotator	python package for genome-protein alignments	protein-annotator
ontologyanalyzer	python package ontologies using the semantic web	ontologyanalyzer

R package: R package and Bioconductor and Posit community: building development release version

Nname	Description	URL
evoseq	genome annotation visualization, phylogeny	evoseq, subfunction genomevisual

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