Comments (2)
Currently what I'm doing to install tools is to direct an ephemeris install tools process to the instance lifted inside the k8s cluster. This suits me because we have other running instances not on k8s and we want to have all our instances with the same tools. However, this is slow, so I want to migrate to a process where I add all installed tools and the sqlite db for tools to a container and then use it as an init container, from where I would copy these to the deployment.
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@nathanweeks I think you could map the tool xml and tool_conf.xml as shown in your example, but the tool code will need to be built as a container. I'd suggest building a new container with your py file, pushing it to docker hub, and adding a mapping in container_mapper_rules.yml
to map your tool_id to the container.
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from galaxy-helm.