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The Linux installation script misses some optional build dependencies - these should be added.

Hi Andrew,

I am trying to install Galacticus from source code, such that I can learn from the code a bit of Astrophysics.. I am running on a up to date CentOs9 system. After installing, as root, normal install, using usual yum of dnf, most dependency packkages (except qhull..for some unknown reason, it got re-install in galacticus-master/galacticusInstallWork), the script ran fine, but stop on F90 compiler error, handling the hdf5 package. The relevant part of the log file is:

building Galacticus
--> make -j1 Galacticus.exe
gfortran -c ./work/build/utility.IO.HDF5.p.F90 -o ./work/build/utility.IO.HDF5.o -ffree-line-length-none -frecursive -DBUILDPATH='./work/build' -J./work/build/moduleBuild/ -I./work/build/ -fintrinsic-modules-path /home/lebrun/Galacticus/Tools/finclude -fintrinsic-modules-path /home/lebrun/Galacticus/Tools/include -fintrinsic-modules-path /home/lebrun/Galacticus/Tools/include/gfortran -fintrinsic-modules-path /home/lebrun/Galacticus/Tools/lib/gfortran/modules -fintrinsic-modules-path /usr/local/finclude -fintrinsic-modules-path /usr/local/include/gfortran -fintrinsic-modules-path /usr/local/include -fintrinsic-modules-path /usr/lib/gfortran/modules -fintrinsic-modules-path /usr/include/gfortran -fintrinsic-modules-path /usr/include -fintrinsic-modules-path /usr/finclude -fintrinsic-modules-path /usr/lib64/gfortran/modules -L/home/lebrun/Galacticus/Tools/lib -L/home/lebrun/Galacticus/Tools/lib64 -pthread -Wall -fbacktrace -ffpe-trap=invalid,zero,overflow -fdump-core -O3 -ffinite-math-only -fno-math-errno -fopenmp -g -DPROCPS -DOFDAVAIL -DFFTW3AVAIL -DANNUNAVAIL -DQHULLUNAVAIL -DMATHEVALUNAVAIL 2>&1 | ./scripts/build/postprocess.pl ./work/build/utility.IO.HDF5.p.F90
source/utility.IO.HDF5.F90; line 454 [preprocessed line 543]; code 43

543 | & H5T_NATIVE_DOUBLE, H5T_NATIVE_INT, H5T_NATIVE_INT_8, H5T_STD_I32BE , &
| 1
Error: Symbol ‘h5t_native_int’ referenced at (1) not found in module ‘hdf5’
source/utility.IO.HDF5.F90; line 454 [preprocessed line 543]; code 59

543 | & H5T_NATIVE_DOUBLE, H5T_NATIVE_INT, H5T_NATIVE_INT_8, H5T_STD_I32BE , &
| 1
Error: Symbol ‘h5t_native_int_8’ referenced at (1) not found in module ‘hdf5’
source/utility.IO.HDF5.F90; line 1342 [preprocessed line 1572]; code 90

....

No idea why H5T_NATIVE would cause problems.. The version of hfdf5 is

root@syn-2603-7080-ff01-8658-0000-0000-0000-1b5a lebrun]# yum info hdf5-devel
Last metadata expiration check: 1:51:03 ago on Fri 05 Jul 2024 12:58:41 PM EDT.
Installed Packages
Name : hdf5-devel
Version : 1.12.1
Release : 7.el9.1
Architecture : x86_64
Size : 3.9 M
Source : hdf5-1.12.1-7.el9.1.src.rpm
Repository : @System
From repo : epel
Summary : HDF5 development files
URL : https://portal.hdfgroup.org/display/HDF5/HDF5
License : BSD
Description : HDF5 development headers and libraries.

[root@syn-2603-7080-ff01-8658-0000-0000-0000-1b5a lebrun]#

Thanks

Paul