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View Code? Open in Web Editor NEWR Reactome FI Cytoscape plugin wrapper
License: Other
R Reactome FI Cytoscape plugin wrapper
License: Other
Error in [.data.frame
(dat, , i) : undefined columns selected
Calls: gene.set.enrichment ... queryAnnotateModules -> df2tsv -> [ -> [.data.frame
need to add tests for cases that return no results at different steps
Using the R cytoscape plugin
Somehow allow creating ReactomeFINetwork objects by providing interaction data rather than computing using the API. These networks can then use the clustering and gene set enrichment analysis.
Right now if the API returns no network an error occurs in the ReactomeFINetwork constructor
HI,
I get error with I set use linkers = TRUE for all version. Any suggestion? Thanks Karim
network <- ReactomeFINetwork("2013", GeneList, use.linkers=TRUE )
Opening and ending tag mismatch: HR line 34 and body
Opening and ending tag mismatch: HR line 1 and html
Premature end of data in tag body line 1
Premature end of data in tag html line 1
Error: 1: Opening and ending tag mismatch: HR line 34 and body
2: Opening and ending tag mismatch: HR line 1 and html
3: Premature end of data in tag body line 1
4: Premature end of data in tag html line 1
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