fritzsedlazeck Goto Github PK

biobricks

A simple framework to simulate parental and admixture offsprings. The framework allows for a benchmark to distinguish inheritance blocks on the offsprings.

bioconda-recipes

Conda recipes for the bioconda channel.

freelancer-theme

Jekyll theme based on Freelancer Start Bootstrap theme

fritzsedlazeck.github.io

My lab github page

na12878

Data and analysis for NA12878 genome on nanopore

nibsv

Kmer based genotyper for short reads.

paragraph

Graph realignment tools for structural variants

parliament2

Runs a combination of tools to generate structural variant calls on whole-genome sequencing data

sge_mummer

Scripts to split reference and run mummer in parallel on an SGE cluster

sniffles

Structural variation caller using third generation sequencing

spectre

Copy number caller for long read data including SNV utilization

survivor

Toolset for SV simulation, comparison and filtering

survivor_ant

A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)

svcollector

Method to optimally select samples for validation and resequencing

svhound

teaching_material

Collection of teaching instructions

thehumanpangenome

Creation and Toolsets for a Long-Read Trio Based Human Pangenome

tool_collection

A collection of scripts useful for processing NGS data

truvari

Structural variant comparison tool for VCFs