service of msviper analysis

mvn package

cp target/msviper-service.war ${CATALINA_HOME}/webapps/.

R needs to be installed in the directory specified by r.installation in application.properties. version 4.2.2 tested.

msviper_starter.r should be placed in a subdirectory called scripts under the directory specified by the value of viper.root in application.properties.

That script depends on R packages installed in a subdirectory called R/hpc under viper.root. You may need to reinstall some package using BiocManager, e.g. BiocManager::install("BiocGenerics") for that libPath.

docker build -t msviper .
docker run -d -p 8080:8080 msviper