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My PyPI packages

I'm Henrik Finsberg, a Senior Research Engineer working at Simula Research Laboratory in department of Computational Physiology in Oslo, NorwayπŸ‡³πŸ‡΄.

I care about reproducibility and good software design. I work primarily with Python but also do some work with JavaScript, C and C++. Recently, I am also trying to pick up Rust.


I work actively on creating tools and guidelines for reproducible research software in the section for scientific computing


A few open source projects I work on

  • ap_features - Library for computing features for action potential traces
  • mps - Tool for working with cardiac MPS data
  • mps-motion - Motion tracking software for cardiac MPS data
  • gotran - Library for declaring and translating ODEs
  • goss - General ODE system solver

I am also an active user of FEniCS and are working on adopting several of my packages to FEniCSx including

  • simcardems - Simula Cardiac ElectroMechanics Solver (FEniCSx version is coming in the future)
  • fenics-pulse and fenicsx-pulse - Simulation software for cardiac mechanics
  • fenics-plotly and fenicsx-plotly Library for plotting object with plotly
  • ldrb - Library for creating rule-based fiber orientations (FEniCSx version is coming in the future)

Henrik Finsberg's Projects

coupling-pulse-beat icon coupling-pulse-beat

Experimenting with coupling fenics-pulse and fenics-beat - this will eventually become the new simcardems

cuda-gs icon cuda-gs

Gram-Schmidt implementation for GPU [WIP]

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