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fengpku's Projects

jekyll-clean icon jekyll-clean

A simple and clean Jekyll theme that's easy to modify. See it here:

juicer icon juicer

A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

mitoz icon mitoz

MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes

ngstools-1 icon ngstools-1

Programs to analyse NGS data for population genetics purposes

online-cv icon online-cv

A minimal Jekyll Theme to host your resume (CV)

plate_scatac-seq icon plate_scatac-seq

A simple and robust plate-based single cell ATAC-seq (scATAC-seq) method

post-gwas-pipeline icon post-gwas-pipeline

A comprehensive pipeline for post-GWAS analysis leveraging diverse types of omics data

rnaseq icon rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

seqkit icon seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

speedseq icon speedseq

A flexible framework for rapid genome analysis and interpretation

svaba icon svaba

Structural variation and indel detection by local assembly

vcf2sfs icon vcf2sfs

R functions for generating site frequency spectra (SFS) from a VCF file.

vcflib icon vcflib

C++ library and cmdline tools for parsing and manipulating VCF files

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