fengpku Goto Github PK

academicpages.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

agusmakmun.github.io

:raised_hands: Free and open-source Jekyll theme

asmc

Ascertained Sequentially Markovian Coalescent

atac_dnase_pipelines

ATAC-seq and DNase-seq processing pipeline

atacseq

Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)

atacseq-1

ATAC-seq peak-calling, QC and differential analysis pipeline

bedops

:microscope: BEDOPS: high-performance genomic feature operations

biotools

A list of useful bioinformatics resources

brb-seqtools

Suite of tools for processing BRB-seq data

cheatsheets

My cheatsheets

chipseq_pipeline

AQUAS TF and histone ChIP-seq pipeline

clinicalgradednaseq

Automated next generation DNA sequencing analysis pipeline suited for clinical tests, with >99.9% sensitivity to Sanger sequencing at read-depth>18

cloops

Accurate and flexible loops calling tool for 3D genomic data based on un-supervised clustering and permuted local background.

clues

Approximate full likelihood inference of selection / inferring allele frequency trajectories

d3

Bring data to life with SVG, Canvas and HTML. :bar_chart::chart_with_upwards_trend::tada:

fengpku.github.io

flexbar

flexible barcode and adapter removal

free-programming-books

:books: Freely available programming books

gaohaoyang.github.io

blogs website

gem3

GEM software suite (GEM, GPS, KMAC, KSM, RMD, etc.)

gnomad_methods

Hail helper functions for the gnomAD project and Translational Genomics Group

gross

Graph-aware Retrieval of Selective Sweeps

herring-cove

Herring Cove is a clean and responsive theme for Jekyll.

hic-bench

A set of pipelines for Hi-C and ChIP-Seq analysis.

hic-pro

HiC-Pro: An optimized and flexible pipeline for Hi-C data processing

hicexplorer

HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.

hichipper

A preprocessing and QC pipeline for HiChIP data

hicplotter

“When everything is connected to everything else, for better or worse, everything matters.” Bruce Mau

higlass

Fast large scale matrix visualization for the web.

imktdata

Pipeline to extract unfolded site frequency spectrum from 1000GP VCF and DGN alignments