Name: Eike Steinig
Type: User
Company: Victorian Infectious Disease Reference Laboratory (VIDRL), The Doherty Institute for Infection and Immunity (PDI)
Bio: Bioinformatics | Infectious Diseases | Nanopore | Metagenomic Diagnostics | Software Development
Location: Melbourne, Australia
Eike Steinig's Projects
Parallel bootstrapping for maximum-likelihood phylogenies wrapping RAxML-NG, PhyML and FastTree :herb:
Implements a dangerous configuration, not for general use
Maximum likelihood inference of time stamped phylogenies and ancestral reconstruction
hybrid assembly pipeline for bacterial genomes
Vagrant box (Ubuntu 16.04) + RStudio Server
Assembly and intrahost / low-frequency variant calling for viral samples
Viral genome coverage evaluation for metagenomic diagnostics :drop_of_blood:
ARTIC SARS-CoV-2 workflow and reporting