A guide on how to find and download raw RNA-seq data from GEO. Batch download FASTQ files using a Python script and the NCBI SRA tools prefetch and fastq-dump.
I get an error that says "fastq-dump2.11.0 err: name not found while resolving query within virtual file system module - failed to resolve accession '~ncbi/public/sra/SAMN09385517.sra' - Cannot resolve accession ( 404)
and then a similar one saying "item not found while constructing within virtual database module - the path cannot be opened as database or table"