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When I run "snakemake -j1 --use-conda", I get following errors:
TabError in file , line 6:
inconsistent use of tabs and spaces in indentation (, line 6)
File "/maps/projects/ralab_nnfc-AUDIT/people/lpm537/software/sc-E2G/workflow/Snakefile", line 28, in
File "/maps/projects/ralab_nnfc-AUDIT/people/lpm537/software/sc-E2G/workflow/../ABC/workflow/Snakefile", line 11, in
File "/maps/projects/ralab/people/lpm537/software/anaconda3/envs/scE2G_231121/lib/python3.12/tokenize.py", line 541, in _generate_tokens_from_c_tokenizer
File "/maps/projects/ralab/people/lpm537/software/anaconda3/envs/scE2G_231121/lib/python3.12/tokenize.py", line 537, in _generate_tokens_from_c_tokenizer
It seems that the line 5 of ABC/workflow/rules/utils.smk should use tab indentation instead of spaces indentation.
After fixing it, I get a SyntaxWarning:
snakemake -j1 --use-conda
/maps/projects/ralab_nnfc-AUDIT/people/lpm537/software/sc-E2G/ABC/workflow/rules/utils.smk:5: SyntaxWarning: invalid escape sequence '\d'
threshold="\d+.\d+",
Should the line 5 in ABC/workflow/rules/utils.smk be
threshold="\\d+\\.\\d+"
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