endrebak.ada's Projects
doom emacs config
Genetic maps interpolated to sites in the 1000 Genomes project
Scripts to fetch MAFs for different populations from 1000 genomes
Augmented Interval Tree implemented in Cython/C
Accelerated Nested Containment List in Cython/C++
bing: Biocore-NTNU command line gene query tool using mygene.info
Conda recipes for the bioconda channel.
Pandas utilities for tab-delimited and other genomic data files
application note
(experimental) Snakefile to create wheels/sdist, upload to PyPI, update bioconda
Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.
A command-line utility that creates projects from cookiecutters (project templates). E.g. Python package projects, jQuery plugin projects.
My Cython cookiecutter-template. Work in progress
Create a UCSC trackhub from a sample-sheet and config file
Experimenting with the fjoin/chromsweep algos in cython
Tools to process and analyze deep sequencing data.
A demo repository for My JSON Server (Alpha)
nothing to see here
Trying out snakemake wrappers
Repo for Lenes RNA website
Use django for EC-Seq
SPA for ecseq database
Find effect alleles for rs-ids from the GWAS Catalogue
Various workflows for the epic2 paper
(Maintenance fork) Find the largest independent set of genetically unrelated samples
Fetch and sort regions from gtfs.