Comments (3)
Hi,
Can you please elaborate more on your problem? Do you want to compare a whole set of source-target interactions across a third variable? If so, this is not implemented currently in the package.
Best,
Enrique
from scpubr.
I have single-cell RNA sequencing data from two groups, group A and group B. Group A is the control group and group B is the drug treatment group. I would like to display and compare the cell communication results from both groups on a single graph. Can you please provide guidance or code for how to do this
from scpubr.
Hi,
Comparisons across datasets are not currently implemented in SCpubr. It is still pending to do. All you can do now is to use the results from an output of liana, where you have A and B combined an used the condition as source/target. But this might not be strictly what you want to visualize.
This is currently outside the scope of SCpubr::do_LigandReceptorPlot()
. Please resort to official liana documentation to generate the plot you need, it might be already implemented in liana
.
Sorry for not being of much help here.
Best,
Enrique
from scpubr.
Related Issues (20)
- colors.use not working with split.by in do_DimPlot HOT 5
- pseudotime Analysis HOT 2
- Chord plots error HOT 3
- Feature plot that also has cluster annotation as colored dots/boxes with legend rather than labels on clusters HOT 5
- Replacing LIANA's plots with SCpubr HOT 2
- do_DimPlot: sizes.highlight not working when raster = TRUE HOT 1
- 'do_SankeyPlot' is not an exported object from 'namespace:SCpubr' HOT 2
- Change font size in do_PathwayActivityPlot HOT 1
- Error using do_GroupwiseDEPlot HOT 2
- Changing colors HOT 2
- Error: 'save_Plot' is not an exported object from 'namespace:SCpubr' HOT 2
- Share SCpubr book for version 1.1.2 HOT 2
- Error using do_DimPlot when using split.by HOT 2
- BUG | do_LigandReceptorPlot() |"arrange_interactions_by = both" implementation HOT 1
- Marking Frequency % inside Barplot stacks HOT 5
- BUG | FUNCTION NAME | BRIEF DESCRIPTION HOT 5
- "Undefined columns selected" | do_FunctionalAnnotationPlot | Function doesn't run HOT 2
- background of label in DimPlot HOT 1
- BUG | do_DimPlot | Multiple legends are visualised when "Group by a variable but split by another" HOT 3
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from scpubr.