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enblacar avatar enblacar commented on June 1, 2024

Hi @ccruizm,

Thanks for pointing out the bug!

This is weird. I get the expected output from the same lines of code, both in v1.1.2 and in the development version.

Perhaps we can work together to narrow the bug down:

  • Which version of SCpubr and Seurat are you using?
  • Can you describe a bit more your type metadata column?
    • Is it a character or a factor?
    • Does it contain NAs?
    • If it is a factor, do you have empty levels? This meaning, that the factor level is there but 0 cells are assigned to it.
  • And perhaps more importantly, does this happen consistently across other metadata columns or is it something specific of your type column?

Best,
Enrique

from scpubr.

enblacar avatar enblacar commented on June 1, 2024

Hi @ccruizm,

I am closing this for now as I am unable to replicate the error with the current information I have.

Please feel free to reopen this if you have further info! I am more than willing to get to the bottom of this bug!

Best,
Enrique

from scpubr.

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