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scpubr-book's Introduction

Hi there ๐Ÿ‘‹

I am a PhD student in bioinformatics working in single-cell RNAseq projects and passionate about data visualization and generating software solutions for specific bionformatics problems.

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scpubr-book's Issues

Aesthetics of Chord plot

Hello,
First, I want to say thank you for the awesome work you are doing with SCpubr!
And the integration with LIANA is just awesome idea!

I have been working on CCC pipeline using both LIANA and SCpubr. I have few aesthetic questions about the chord diagrams.

  1. And is it possible to reduce the fontsize of the labels and make the sections thinner (image below)?
  2. Is it possible to increase the size of the center plot and somehow improve the long labels?
  3. I have also noticed the default setting Chord plots produce quite different results, compared to the Chord plots in the tutorial at https://enblacar.github.io/SCpubr-book/ligand-receptor-analysis.html#compute-chord-diagrams-of-the-interactions
  4. Is it possible to make the transparency as function of Interaction specificity, similarly to NicheNet.

In any case, thanks a lot!

Capture

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