((scidata_cif2) ) n00002621@chalk3 scidata_cif2 % dic2owl static/cifdics/cif_core.dic -o static/onts/cif_core.ttl
CORE_DIC3.2.0 is a DDLm dictionary
Import mode All applied to following frames
['_geom_torsion.site_symmetry_1', '_diffrn_orient_refln.angle_phi', '_diffrn_standard_refln.index_h', '_atom_site_aniso.u_13_su', '_diffrn_orient_refln.angle_chi_su', '_atom_type_scat.hi_ang_fox_c3', '_diffrn_orient_refln.angle_psi', '_display_colour.red', '_atom_site_aniso.u_11', '_atom_sites_fract_transform.mat_21_su', '_atom_site_aniso.b_13', '_atom_sites_cartn_transform.mat_13_su', '_cell.angle_gamma_su', '_refln.f_squared_calc_su', '_atom_sites_fract_transform.mat_32_su', '_atom_type_scat.cromer_mann_a3', '_model_site.display_colour', '_atom_type.radius_bond', '_atom_site_aniso.u_33', '_geom_torsion.site_symmetry_4', '_atom_site.fract_z', '_diffrn_reflns_transf_matrix.21', '_diffrn_scale_group.i_net_su', '_diffrn_refln.intensity_total_su', '_atom_sites_cartn_transform.vec_1', '_atom_site_aniso.u_12_su', '_atom_sites_fract_transform.mat_21', '_cell.length_c', '_chemical.enantioexcess_bulk_su', '_cell.length_b_su', '_exptl_crystal_face.diffr_kappa', '_chemical.enantioexcess_crystal_su', '_geom_bond.site_symmetry_2', '_diffrn_reflns.limit_h_min', '_refine_ls.restrained_s_all_su', '_exptl_crystal.size_max_su', '_geom_angle.atom_site_label_3', '_refln.phase_meas_su', '_atom_site_aniso.b_13_su', '_atom_site_aniso.b_12', '_geom_hbond.atom_site_label_d', '_geom_bond.site_symmetry_1', '_atom_sites_cartn_transform.mat_11', '_atom_sites_cartn_transform.mat_13', '_atom_sites_fract_transform.vec_2', '_atom_site.fract_x_su', '_atom_sites_fract_transform.vec_1_su', '_diffrn_refln.intensity_peak_su', '_display_colour.hue', '_atom_site_aniso.u_12', '_exptl_crystal_face.diffr_psi_su', '_geom_angle.site_symmetry_3', '_refln.a_calc_su', '_atom_sites_cartn_transform.mat_32_su', '_diffrn_reflns.limit_k_max', '_atom_type_scat.dispersion_real_cu', '_geom_angle.atom_site_label_1', '_exptl.transmission_factor_min_su', '_cell.angle_gamma', '_refine_ls.restrained_s_gt_su', '_atom_sites_cartn_transform.vec_3_su', '_atom_type_scat.hi_ang_fox_c0', '_diffrn_orient_refln.angle_omega', '_refln.b_calc_su', '_diffrn_orient_refln.index_h', '_diffrn_orient_refln.angle_kappa', '_cell.angle_alpha_su', '_diffrn_reflns_transf_matrix.33', '_exptl_crystal.size_mid_su', '_atom_site.label_component_4', '_exptl_crystal_face.index_k', '_diffrn_reflns.limit_l_min', '_atom_type.atomic_number', '_atom_sites_cartn_transform.mat_11_su', '_diffrn_orient_refln.angle_omega_su', '_diffrn_standard_refln.index_k', '_atom_site_aniso.u_22_su', '_atom_site.label', '_atom_sites_cartn_transform.vec_2_su', '_geom_bond.atom_site_label_2', '_cell.angle_beta_su', '_atom_sites_fract_transform.mat_32', '_atom_sites_fract_transform.mat_23', '_atom_sites_fract_transform.vec_2_su', '_diffrn_standards.decay_percent_su', '_atom_site_aniso.u_23', '_reflns.limit_h_min', '_atom_sites_fract_transform.mat_31', '_atom_site_aniso.b_23_su', '_atom_type_scat.cromer_mann_a4', '_diffrn_refln.angle_psi', '_atom_sites_cartn_transform.mat_31_su', '_diffrn_reflns.limit_l_max', '_atom_site.cartn_y', '_geom_hbond.atom_site_label_h', '_geom_hbond.site_symmetry_d', '_diffrn_reflns_transf_matrix.13', '_atom_sites_fract_transform.vec_3_su', '_diffrn_orient_refln.angle_phi_su', '_cell_measurement_refln.index_l', '_atom_site_aniso.b_22', '_diffrn_refln.angle_chi', '_exptl_crystal_face.diffr_phi_su', '_geom_angle.site_symmetry_1', '_refln.a_meas_su', '_atom_sites_fract_transform.mat_11', '_atom_site.fract_y_su', '_cell_measurement_refln.index_h', '_geom_contact.site_symmetry_2', '_atom_type.electron_count', '_refln.intensity_calc_su', '_atom_type_scat.cromer_mann_c', '_diffrn_orient_matrix.ub_21', '_atom_sites_fract_transform.mat_11_su', '_atom_type_scat.cromer_mann_b1', '_atom_site_aniso.u_33_su', '_atom_sites_fract_transform.mat_13', '_exptl_crystal.size_min_su', '_atom_analytical_mass_loss.temperature_su', '_atom_sites_cartn_transform.vec_3', '_geom_hbond.site_symmetry_h', '_exptl.transmission_factor_max_su', '_atom_sites_fract_transform.mat_22_su', '_atom_site.fract_y', '_reflns.limit_k_min', '_exptl_crystal.size_length_su', '_atom_analytical_mass_loss.percent_su', '_reflns.limit_h_max', '_diffrn_refln.index_k', '_diffrn_refln.intensity_bg_1_su', '_atom_sites_cartn_transform.mat_22', '_atom_type.atomic_mass', '_atom_sites_fract_transform.mat_33_su', '_atom_site.label_component_1', '_atom_type_scat.dispersion_imag_mo', '_atom_site_aniso.b_11_su', '_atom_sites_cartn_transform.vec_2', '_display_colour.blue', '_cell.angle_beta', '_diffrn_reflns_transf_matrix.11', '_atom_site.fract_z_su', '_diffrn_orient_refln.index_k', '_geom_torsion.atom_site_label_1', '_diffrn_refln.counts_net_su', '_diffrn_reflns_transf_matrix.12', '_atom_type_scat.cromer_mann_b3', '_refln.f_calc_su', '_atom_site.label_component_6', '_diffrn_refln.intensity_net_su', '_geom_hbond.site_symmetry_a', '_diffrn_reflns_transf_matrix.23', '_diffrn_orient_matrix.ub_22', '_atom_type_scat.cromer_mann_b4', '_diffrn_refln.angle_omega', '_diffrn_source.target', '_atom_sites_cartn_transform.vec_1_su', '_atom_site.cartn_x_su', '_database_related.database_id', '_exptl_crystal_appearance.hue', '_diffrn_refln.index_l', '_geom_torsion.atom_site_label_3', '_exptl_crystal_face.perp_dist_su', '_chemical.melting_point_su', '_geom_torsion.atom_site_label_2', '_atom_sites_fract_transform.mat_22', '_atom_site_aniso.b_33_su', '_atom_type_scat.hi_ang_fox_c1', '_atom_site_aniso.b_23', '_cell.length_c_su', '_cell.length_a_su', '_refln.index_l', '_cell.length_a', '_diffrn_reflns.limit_k_min', '_refine_ls.f_calc_precision_su', '_atom_type.element_symbol', '_diffrn_orient_refln.angle_kappa_su', '_exptl_crystal_face.diffr_kappa_su', '_exptl_crystal_face.index_h', '_diffrn_orient_matrix.ub_33', '_geom_contact.atom_site_label_1', '_atom_sites_cartn_transform.mat_33_su', '_diffrn_orient_matrix.ub_31', '_atom_sites_cartn_transform.mat_12', '_atom_site_aniso.u_13', '_diffrn_refln.angle_phi', '_atom_type_scat.cromer_mann_b2', '_atom_sites_fract_transform.mat_33', '_atom_sites_fract_transform.mat_31_su', '_space_group.name_schoenflies', '_diffrn_orient_matrix.ub_13', '_exptl_crystal_face.diffr_chi_su', '_reflns.limit_k_max', '_atom_sites_fract_transform.mat_23_su', '_atom_site.cartn_z_su', '_atom_sites_fract_transform.vec_1', '_exptl_crystal_face.diffr_chi', '_atom_sites_fract_transform.mat_12', '_refln.index_k', '_atom_site_aniso.u_11_su', '_reflns_scale.meas_f_squared_su', '_atom_site_aniso.b_33', '_exptl_crystal.density_diffrn_su', '_atom_site.cartn_z', '_atom_sites_cartn_transform.mat_12_su', '_display_colour.green', '_geom_torsion.site_symmetry_3', '_atom_type_scat.cromer_mann_a1', '_atom_sites_fract_transform.mat_13_su', '_reflns.limit_l_max', '_atom_sites_cartn_transform.mat_23_su', '_atom_sites_fract_transform.mat_12_su', '_chemical_formula.weight_meas_su', '_atom_sites_cartn_transform.mat_22_su', '_atom_type_scat.hi_ang_fox_c2', '_diffrn_orient_refln.angle_psi_su', '_atom_sites_cartn_transform.mat_31', '_atom_site.cartn_y_su', '_atom_sites_cartn_transform.mat_23', '_diffrn_refln.angle_kappa', '_diffrn_orient_matrix.ub_32', '_refln.b_meas_su', '_diffrn_refln.intensity_bg_2_su', '_cell_measurement_refln.theta_su', '_diffrn_reflns_transf_matrix.31', '_exptl_crystal_face.diffr_psi', '_exptl_crystal.size_rad_su', '_geom_torsion.atom_site_label_4', '_geom_angle.site_symmetry_2', '_geom_bond.valence_su', '_geom_bond.atom_site_label_1', '_geom_hbond.atom_site_label_a', '_diffrn_orient_matrix.ub_23', '_atom_site.label_component_2', '_atom_analytical.chemical_species_mass_percent_su', '_atom_sites_fract_transform.vec_3', '_diffrn_orient_matrix.ub_12', '_atom_type_scat.dispersion_imag_cu', '_atom_site.wyckoff_symbol', '_cell.length_b', '_exptl_crystal_face.diffr_phi', '_atom_site_aniso.b_11', '_atom_sites_cartn_transform.mat_21_su', '_atom_site.cartn_x', '_atom_site.label_component_3', '_diffrn_orient_refln.angle_theta', '_diffrn_orient_refln.angle_theta_su', '_diffrn_refln.angle_theta', '_diffrn_orient_refln.index_l', '_diffrn_reflns_transf_matrix.22', '_atom_sites_cartn_transform.mat_33', '_space_group.name_h-m_ref', '_atom_type_scat.cromer_mann_a2', '_geom_torsion.site_symmetry_2', '_atom_analytical.analyte_mass_percent_su', '_diffrn_standard_refln.index_l', '_atom_sites_cartn_transform.mat_21', '_atom_type_scat.dispersion_real_mo', '_reflns.limit_l_min', '_diffrn_orient_matrix.ub_11', '_atom_site_aniso.b_22_su', '_atom_type.display_colour', '_space_group_wyckoff.letter', '_atom_site.fract_x', '_refln.f_complex_su', '_reflns_scale.meas_intensity_su', '_diffrn_refln.index_h', '_reflns_scale.meas_f_su', '_refln.index_h', '_refln.phase_calc_su', '_atom_site.label_component_5', '_atom_site.label_component_0', '_diffrn_reflns_transf_matrix.32', '_diffrn_reflns.limit_h_max', '_atom_sites_cartn_transform.mat_32', '_atom_site_aniso.u_22', '_atom_site_aniso.u_23_su', '_atom_type.analytical_mass_percent_su', '_atom_site_aniso.b_12_su', '_atom_analytical.analyte', '_diffrn_orient_refln.angle_chi', '_refine_ls.goodness_of_fit_ref_su', '_geom_contact.site_symmetry_1', '_exptl_crystal_face.index_l', '_model_site.symop', '_diffrn_standards.scale_su_average_su', '_geom_contact.atom_site_label_2', '_cell.angle_alpha', '_cell_measurement_refln.index_k']
TEMPL_ATTR1.4.10 is a DDLm dictionary
Import mode All applied to following frames
[]
Loopable cats:[]
Expansion list:{}
Expansion cat/obj values: {}
Keys for categories{}
Added https://www.iucr.org/__data/iucr/cif/dictionaries/templ_attr.cif to cached dictionaries
COM_VAL1.4.8 is a DDLm dictionary
Import mode All applied to following frames
[]
Loopable cats:[]
Expansion list:{}
Expansion cat/obj values: {}
Keys for categories{}
Added https://www.iucr.org/__data/iucr/cif/dictionaries/templ_enum.cif to cached dictionaries
Loopable cats:['atom_site_aniso', 'diffrn_radiation_wavelength', 'exptl_crystal_face', 'atom_analytical', 'atom_analytical_source', 'citation_author', 'publ_manuscript_incl_extra', 'geom_torsion', 'geom_hbond', 'geom_angle', 'diffrn_refln', 'citation_editor', 'reflns_shell', 'diffrn_orient_refln', 'diffrn_standard_refln', 'publ_contact_author', 'geom_bond', 'space_group_wyckoff', 'diffrn_reflns_class', 'valence_param', 'diffrn_scale_group', 'publ_body', 'diffrn_attenuator', 'reflns_scale', 'atom_type_scat', 'chemical_conn_bond', 'atom_analytical_mass_loss', 'journal_index', 'space_group_symop', 'publ_author', 'database_related', 'audit_author_role', 'geom_contact', 'refine_ls_class', 'valence_ref', 'atom_site', 'audit_contact_author', 'audit_author', 'display_colour', 'atom_type', 'space_group_generator', 'chemical_conn_atom', 'cell_measurement_refln', 'audit_link', 'audit_support', 'audit_conform', 'reflns_class', 'citation', 'refln', 'model_site']
Expansion list:{'atom_analytical': ['atom_analytical_source', 'atom_analytical_mass_loss'], 'atom_site': ['atom_site_aniso'], 'atom_type': ['atom_type_scat']}
Expansion cat/obj values: {('atom_analytical', 'technique'): ['_atom_analytical_source.technique'], ('atom_analytical', 'equipment_make'): ['_atom_analytical_source.equipment_make'], ('atom_analytical', 'special_details'): ['_atom_analytical_mass_loss.special_details'], ('atom_analytical', 'analysis_temperature_su'): ['_atom_analytical_mass_loss.temperature_su'], ('atom_analytical', 'percent_su'): ['_atom_analytical_mass_loss.percent_su'], ('atom_analytical', 'meas_id'): ['_atom_analytical_mass_loss.meas_id'], ('atom_analytical', 'temperature'): ['_atom_analytical_mass_loss.temperature'], ('atom_analytical', 'percent'): ['_atom_analytical_mass_loss.percent'], ('atom_site', 'u_13_su'): ['_atom_site_aniso.U_13_su'], ('atom_site', 'label'): ['_atom_site_aniso.label'], ('atom_site', 'matrix_u'): ['_atom_site_aniso.matrix_U'], ('atom_site', 'u_11'): ['_atom_site_aniso.U_11'], ('atom_site', 'b_13'): ['_atom_site_aniso.B_13'], ('atom_site', 'type_symbol'): ['_atom_site_aniso.type_symbol'], ('atom_site', 'u_33'): ['_atom_site_aniso.U_33'], ('atom_site', 'u_12_su'): ['_atom_site_aniso.U_12_su'], ('atom_site', 'b_13_su'): ['_atom_site_aniso.B_13_su'], ('atom_site', 'b_12'): ['_atom_site_aniso.B_12'], ('atom_site', 'u_12'): ['_atom_site_aniso.U_12'], ('atom_site', 'ratio'): ['_atom_site_aniso.ratio'], ('atom_site', 'u_22_su'): ['_atom_site_aniso.U_22_su'], ('atom_site', 'u_23'): ['_atom_site_aniso.U_23'], ('atom_site', 'b_23_su'): ['_atom_site_aniso.B_23_su'], ('atom_site', 'matrix_b_su'): ['_atom_site_aniso.matrix_B_su'], ('atom_site', 'b_22'): ['_atom_site_aniso.B_22'], ('atom_site', 'u_33_su'): ['_atom_site_aniso.U_33_su'], ('atom_site', 'b_11_su'): ['_atom_site_aniso.B_11_su'], ('atom_site', 'b_33_su'): ['_atom_site_aniso.B_33_su'], ('atom_site', 'b_23'): ['_atom_site_aniso.B_23'], ('atom_site', 'u_13'): ['_atom_site_aniso.U_13'], ('atom_site', 'u_11_su'): ['_atom_site_aniso.U_11_su'], ('atom_site', 'b_33'): ['_atom_site_aniso.B_33'], ('atom_site', 'matrix_b'): ['_atom_site_aniso.matrix_B'], ('atom_site', 'b_11'): ['_atom_site_aniso.B_11'], ('atom_site', 'b_22_su'): ['_atom_site_aniso.B_22_su'], ('atom_site', 'matrix_u_su'): ['_atom_site_aniso.matrix_U_su'], ('atom_site', 'u_22'): ['_atom_site_aniso.U_22'], ('atom_site', 'u_23_su'): ['_atom_site_aniso.U_23_su'], ('atom_site', 'b_12_su'): ['_atom_site_aniso.B_12_su'], ('atom_type', 'hi_ang_fox_c3'): ['_atom_type_scat.hi_ang_Fox_c3'], ('atom_type', 'cromer_mann_a3'): ['_atom_type_scat.Cromer_Mann_a3'], ('atom_type', 'dispersion_imag'): ['_atom_type_scat.dispersion_imag'], ('atom_type', 'dispersion_real_cu'): ['_atom_type_scat.dispersion_real_Cu'], ('atom_type', 'symbol'): ['_atom_type_scat.symbol'], ('atom_type', 'hi_ang_fox_c0'): ['_atom_type_scat.hi_ang_Fox_c0'], ('atom_type', 'source'): ['_atom_type_scat.source'], ('atom_type', 'cromer_mann_a4'): ['_atom_type_scat.Cromer_Mann_a4'], ('atom_type', 'cromer_mann_c'): ['_atom_type_scat.Cromer_Mann_c'], ('atom_type', 'cromer_mann_b1'): ['_atom_type_scat.Cromer_Mann_b1'], ('atom_type', 'dispersion_imag_mo'): ['_atom_type_scat.dispersion_imag_Mo'], ('atom_type', 'cromer_mann_b3'): ['_atom_type_scat.Cromer_Mann_b3'], ('atom_type', 'cromer_mann_b4'): ['_atom_type_scat.Cromer_Mann_b4'], ('atom_type', 'versus_stol_list'): ['_atom_type_scat.versus_stol_list'], ('atom_type', 'hi_ang_fox_c1'): ['_atom_type_scat.hi_ang_Fox_c1'], ('atom_type', 'hi_ang_fox_coeffs'): ['_atom_type_scat.hi_ang_Fox_coeffs'], ('atom_type', 'cromer_mann_b2'): ['_atom_type_scat.Cromer_Mann_b2'], ('atom_type', 'dispersion_source'): ['_atom_type_scat.dispersion_source'], ('atom_type', 'length_neutron'): ['_atom_type_scat.length_neutron'], ('atom_type', 'cromer_mann_a1'): ['_atom_type_scat.Cromer_Mann_a1'], ('atom_type', 'dispersion_real'): ['_atom_type_scat.dispersion_real'], ('atom_type', 'hi_ang_fox_c2'): ['_atom_type_scat.hi_ang_Fox_c2'], ('atom_type', 'dispersion_imag_cu'): ['_atom_type_scat.dispersion_imag_Cu'], ('atom_type', 'dispersion'): ['_atom_type_scat.dispersion'], ('atom_type', 'cromer_mann_a2'): ['_atom_type_scat.Cromer_Mann_a2'], ('atom_type', 'cromer_mann_coeffs'): ['_atom_type_scat.Cromer_Mann_coeffs'], ('atom_type', 'dispersion_real_mo'): ['_atom_type_scat.dispersion_real_Mo']}
Keys for categories{'atom_site_aniso': [['_atom_site_aniso.label']], 'diffrn_radiation_wavelength': [['_diffrn_radiation_wavelength.id']], 'exptl_crystal_face': [['_exptl_crystal_face.index_h', '_exptl_crystal_face.index_k', '_exptl_crystal_face.index_l']], 'atom_analytical': [['_atom_analytical.id'], ['_atom_analytical_source.id'], ['_atom_analytical_mass_loss.id']], 'atom_analytical_source': [['_atom_analytical_source.id']], 'citation_author': [['_citation_author.citation_id', '_citation_author.ordinal']], 'publ_manuscript_incl_extra': [['_publ_manuscript_incl_extra.item']], 'geom_torsion': [['_geom_torsion.atom_site_label_1', '_geom_torsion.atom_site_label_2', '_geom_torsion.atom_site_label_3', '_geom_torsion.atom_site_label_4', '_geom_torsion.site_symmetry_1', '_geom_torsion.site_symmetry_2', '_geom_torsion.site_symmetry_3', '_geom_torsion.site_symmetry_4']], 'geom_hbond': [['_geom_hbond.atom_site_label_D', '_geom_hbond.atom_site_label_H', '_geom_hbond.atom_site_label_A', '_geom_hbond.site_symmetry_D', '_geom_hbond.site_symmetry_H', '_geom_hbond.site_symmetry_A']], 'geom_angle': [['_geom_angle.atom_site_label_1', '_geom_angle.atom_site_label_2', '_geom_angle.atom_site_label_3', '_geom_angle.site_symmetry_1', '_geom_angle.site_symmetry_2', '_geom_angle.site_symmetry_3']], 'diffrn_refln': [['_diffrn_refln.hkl']], 'citation_editor': [['_citation_editor.citation_id', '_citation_editor.ordinal']], 'reflns_shell': [['_reflns_shell.d_res_low', '_reflns_shell.d_res_high']], 'diffrn_orient_refln': [['_diffrn_orient_refln.index_h', '_diffrn_orient_refln.index_k', '_diffrn_orient_refln.index_l']], 'diffrn_standard_refln': [['_diffrn_standard_refln.index_h', '_diffrn_standard_refln.index_k', '_diffrn_standard_refln.index_l']], 'publ_contact_author': [['_publ_contact_author.id']], 'geom_bond': [['_geom_bond.atom_site_label_1', '_geom_bond.atom_site_label_2', '_geom_bond.site_symmetry_1', '_geom_bond.site_symmetry_2']], 'space_group_wyckoff': [['_space_group_Wyckoff.id']], 'diffrn_reflns_class': [['_diffrn_reflns_class.code']], 'valence_param': [['_valence_param.id']], 'diffrn_scale_group': [['_diffrn_scale_group.code']], 'publ_body': [['_publ_body.label']], 'diffrn_attenuator': [['_diffrn_attenuator.code']], 'reflns_scale': [['_reflns_scale.group_code']], 'atom_type_scat': [['_atom_type_scat.symbol']], 'chemical_conn_bond': [['_chemical_conn_bond.atom_1', '_chemical_conn_bond.atom_2']], 'atom_analytical_mass_loss': [['_atom_analytical_mass_loss.id']], 'journal_index': [['_journal_index.id']], 'space_group_symop': [['_space_group_symop.id']], 'publ_author': [['_publ_author.id']], 'database_related': [['_database_related.id']], 'audit_author_role': [['_audit_author_role.id', '_audit_author_role.role']], 'geom_contact': [['_geom_contact.atom_site_label_1', '_geom_contact.atom_site_label_2', '_geom_contact.site_symmetry_1', '_geom_contact.site_symmetry_2']], 'refine_ls_class': [['_refine_ls_class.code']], 'valence_ref': [['_valence_ref.id']], 'atom_site': [['_atom_site.label'], ['_atom_site_aniso.label']], 'audit_contact_author': [['_audit_contact_author.id']], 'audit_author': [['_audit_author.id']], 'display_colour': [['_display_colour.hue']], 'atom_type': [['_atom_type.symbol'], ['_atom_type_scat.symbol']], 'space_group_generator': [['_space_group_generator.key']], 'chemical_conn_atom': [['_chemical_conn_atom.number']], 'cell_measurement_refln': [['_cell_measurement_refln.index_h', '_cell_measurement_refln.index_k', '_cell_measurement_refln.index_l']], 'audit_link': [['_audit_link.block_code']], 'audit_support': [['_audit_support.id']], 'audit_conform': [['_audit_conform.dict_name']], 'reflns_class': [['_reflns_class.code']], 'citation': [['_citation.id']], 'refln': [['_refln.index_h', '_refln.index_k', '_refln.index_l']], 'model_site': [['_model_site.label', '_model_site.symop']]}
Traceback (most recent call last):
  File "/Users/n00002621/.local/share/virtualenvs/scidata_cif2-FqeurwlC/bin/dic2owl", line 8, in <module>
    sys.exit(main())
  File "/Users/n00002621/PycharmProjects/CIF-ontology/dic2owl/dic2owl/cli.py", line 87, in main
    dic2owl_run(dicfile=args.dicfile, ttlfile=args.ttlfile)
  File "/Users/n00002621/PycharmProjects/CIF-ontology/dic2owl/dic2owl/dic2owl.py", line 272, in main
    onto = gen.generate()
  File "/Users/n00002621/PycharmProjects/CIF-ontology/dic2owl/dic2owl/dic2owl.py", line 117, in generate
    self._add_item(item)
  File "/Users/n00002621/PycharmProjects/CIF-ontology/dic2owl/dic2owl/dic2owl.py", line 128, in _add_item
    self._add_data_value(item)
  File "/Users/n00002621/PycharmProjects/CIF-ontology/dic2owl/dic2owl/dic2owl.py", line 184, in _add_data_value
    self._add_item(parent)
  File "/Users/n00002621/PycharmProjects/CIF-ontology/dic2owl/dic2owl/dic2owl.py", line 126, in _add_item
    self._add_category(item)
  File "/Users/n00002621/PycharmProjects/CIF-ontology/dic2owl/dic2owl/dic2owl.py", line 161, in _add_category
    self._add_category(parent_item)
  File "/Users/n00002621/PycharmProjects/CIF-ontology/dic2owl/dic2owl/dic2owl.py", line 161, in _add_category
    self._add_category(parent_item)
  File "/Users/n00002621/PycharmProjects/CIF-ontology/dic2owl/dic2owl/dic2owl.py", line 155, in _add_category
    self._add_top(item)
  File "/Users/n00002621/PycharmProjects/CIF-ontology/dic2owl/dic2owl/dic2owl.py", line 141, in _add_top
    self._add_annotations(top, item)
  File "/Users/n00002621/PycharmProjects/CIF-ontology/dic2owl/dic2owl/dic2owl.py", line 216, in _add_annotations
    raise MissingAnnotationError(annotation_name)
dic2owl.dic2owl.MissingAnnotationError: _dictionary.doi

.  # Repository root - automatic versioning using CalVer.
+-- README.md
+-- dic2owl  # Python generation package/CLI. Versioned separately using SemVer.
|   +-- setup.py
|   +-- dic2owl
|   |   +-- __init__.py
|   |   +-- generate_cif.py
|   |   +-- ...
+-- ontology  # CIF ontology (total). Automatic versioning based on the content's versions.
|   +-- cif.ttl  # CIF Core dictionary. Versioned separately using SemVer.
|   +-- cif_top.ttl  # Top CIF ontology. Versioned separately using SemVer.
|   +-- ...

Traceback (most recent call last):
  File "/Users/n00002621/Library/Python/3.11/bin/dic2owl", line 8, in <module>
    sys.exit(main())
             ^^^^^^
  File "/Users/n00002621/PycharmProjects/CIF-ontology/dic2owl/dic2owl/cli.py", line 95, in main
    dic2owl_run(
  File "/Users/n00002621/PycharmProjects/CIF-ontology/dic2owl/dic2owl/dic2owl.py", line 274, in main
    onto = gen.generate()
           ^^^^^^^^^^^^^^
  File "/Users/n00002621/PycharmProjects/CIF-ontology/dic2owl/dic2owl/dic2owl.py", line 118, in generate
    self._add_item(item)
  File "/Users/n00002621/PycharmProjects/CIF-ontology/dic2owl/dic2owl/dic2owl.py", line 129, in _add_item
    self._add_data_value(item)
  File "/Users/n00002621/PycharmProjects/CIF-ontology/dic2owl/dic2owl/dic2owl.py", line 185, in _add_data_value
    self._add_item(parent)
  File "/Users/n00002621/PycharmProjects/CIF-ontology/dic2owl/dic2owl/dic2owl.py", line 127, in _add_item
    self._add_category(item)
  File "/Users/n00002621/PycharmProjects/CIF-ontology/dic2owl/dic2owl/dic2owl.py", line 162, in _add_category
    self._add_category(parent_item)
  File "/Users/n00002621/PycharmProjects/CIF-ontology/dic2owl/dic2owl/dic2owl.py", line 162, in _add_category
    self._add_category(parent_item)
  File "/Users/n00002621/PycharmProjects/CIF-ontology/dic2owl/dic2owl/dic2owl.py", line 165, in _add_category
    cls = types.new_class(name, (self.onto[parent_name],))
                                 ~~~~~~~~~^^^^^^^^^^^^^
  File "/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/ontopy/ontology.py", line 249, in __getitem__
    item = self.get_by_label(name)
           ^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/local/Library/Frameworks/Python.framework/Versions/3.11/lib/python3.11/site-packages/ontopy/ontology.py", line 422, in get_by_label
    raise NoSuchLabelError(f"No label annotations matches '{label}'")
ontopy.utils.NoSuchLabelError: No label annotations matches 'CIF_CORE'

> dic2owl cif_core.dic

Fail value check, match only 0-208 in string '\n    The reciprocal space matrix for converting the U(ij) matrix of\n    atomic displacement parameters to a dimensionless beta(IJ) matrix.\n    The ADP factor in a structure factor expression:\n\n    t = exp - 2π^2^ ( U11 h h a* a* + ...... 2 U23 k l b* c* )\n    t = exp - 0.25  ( B11 h h a* a* + ...... 2 B23 k l b* c* )\n      = exp -       ( β11 h h + ............ 2 β23 k l )\n\n    The conversion of the U or B matrices to the β matrix\n\n        β =   C U C   =    C B C /8π^2^\n\n    where C is conversion matrix defined here.'
Traceback (most recent call last):
...
CifFile.StarFile.StarError: 
Star Format error: Data item "'\n    The reciprocal space matrix for converting the U(ij) matrix of\n    atomic displacement parameters to a dimensionless beta(IJ) matrix.\n    The ADP factor in a structure factor expression:\n\n    t = exp - 2π^2^ ( U11 h h a* a* + ...... 2 U23 k l b* c* )\n    t = exp - 0.25  ( B11 h h a* a* + ...... 2 B23 k l b* c* )\n      = exp -       ( β11 h h + ............ 2 β23 k l )\n\n    The conversion of the U or B matrices to the β matrix\n\n        β =   C U C   =    C B C /8π^2^\n\n    where C is conversion matrix defined here.'"... contains forbidden characters

  dic2owl cif_core.dic

<...>
  File "<virtualenv-dir>/cif-emmo/lib/python3.8/site-packages/ontopy/ontology.py", line 243, in get_by_label
    raise NoSuchLabelError('No label annotations matches %s' % label)
ontopy.ontology.NoSuchLabelError: No label annotations matches Word