guac_example

hackerrank_scraper

hospital_beds_per_capita

A rough stab at estimating the distribution of hospital beds per capita across California

intermediate_cpp

interpreting_the_tape_of_life

Code, data, and analysis for Interpreting the Tape of Life: Ancestry-based Metrics Provide Insights and Intuition about Evolutionary Dynamics

ipythonblocks

Practice Python with colored grids in the IPython Notebook

isalstudents

Temporary landing page for the ISAL student group

jekyll-text-theme

💎 🐳 A super customizable Jekyll theme for personal site, team site, blog, project, documentation, etc.

khmer

In-memory nucleotide sequence k-mer counting, filtering, graph traversal and more

lab_handbook

Theory Division Lab Handbook

lex-prob-is-np-hard

Code and materials for the paper "Calculating Lexicase Selection Probabilities is NP-Hard

lexicase-tradeoffs

A library for calculating the probabilities of selection under lexicase selection

lineage_viz_tool

A tool for visualizing lineages stored in a standards-compliant format

mabe2

Version 2 of the Modular Agent-Based Evolver

mabe2_testing_example

map-elites-gp

Using MAP-Elites to improve genetic programming

memic_model

Model of cancer growth under spatially heterogeneous oxygen

mfm

Movable Feast Machine C++ reference implementation and simulator

mmore500.github.io

My personal and academic site

modes-toolbox-paper

Code, data, analysis and text for our paper on measuring hallmarks of open-ended evolution

moran_process

more_planets

nuevadsp

oee_alifexv

open_science_talk_beacon_2020

pandas

Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more

parallel-coordinates

A parallel coordinates plot in canvas. This is a d3 chart that is unstable and in development.

phylodiversity-metrics-in-ec-gptp-2021

Measuring phylogenetic diversity metrics in evolutionary computation

phylogeny-informed-evaluation

phylogeny_wrangling_tools

Phylogeny wrangling scripts that I don't expect to be generally useful enough for the alife-data-standards repos