embodied-computation-group / cardioception Goto Github PK

Hey! I'm relatively new to python and can't figure out what's going on -- I keep getting the following error:

Collecting psychopy>=2020.1.2
  Using cached PsychoPy-2022.2.2.zip (26.2 MB)
  Preparing metadata (setup.py) ... error
  error: subprocess-exited-with-error
  
  × python setup.py egg_info did not run successfully.
  │ exit code: 1
  ╰─> [16 lines of output]
      /private/var/folders/l6/rw9jlvzx185bqxwpk43j385m0000gn/T/pip-install-a69fs8cu/psychopy_77e79aeb6e4043fd84efbcbfde5421ff/setup.py:28: SetuptoolsDeprecationWarning: As setuptools moves its configuration towards `pyproject.toml`,
      `setuptools.config.read_configuration` became deprecated.
      
      For the time being, you can use the `setuptools.config.setupcfg` module
      to access a backward compatible API, but this module is provisional
      and might be removed in the future.
      
        required = read_configuration('setup.cfg')['options']['install_requires']
      /opt/anaconda3/lib/python3.8/site-packages/setuptools/config/setupcfg.py:463: SetuptoolsDeprecationWarning: The license_file parameter is deprecated, use license_files instead.
        warnings.warn(msg, warning_class)
      Traceback (most recent call last):
        File "<string>", line 2, in <module>
        File "<pip-setuptools-caller>", line 34, in <module>
        File "/private/var/folders/l6/rw9jlvzx185bqxwpk43j385m0000gn/T/pip-install-a69fs8cu/psychopy_77e79aeb6e4043fd84efbcbfde5421ff/setup.py", line 41, in <module>
          required.remove('pyqt5; python_version >= "3"')
      ValueError: list.remove(x): x not in list
      [end of output]

Any help to resolve would be appreciated

Hello, thank you for this very interesting research! Is there a french version of this task?

The keyboard version of the HRD task is not working as expected and we do not recommend using it. The mouse version should be used instead because it might be easier for the participant.

Because we are not really using this functionality, fixing this is still a low priority and it is not expected anytime soon unless someone else works on it.

Add exit option (press Esc) for all tasks

I've been trying to run this code to analyze cardioception data in R! However, my code keeps getting stuck trying to run single subject analysis. After looking through the code, it doesn't look like "bins" are ever defined in the get_AUC helper function.

Here's the specific error:

"Error in get_AUROC(df, unique(df$Modality)) :
argument "bins" is missing, with no default"

Hi @LegrandNico,

There is an import error with the systole package: "ImportError: cannot import name 'oxi_peaks' from 'systole.detection'".

(using systole version 0.2.2, as 'findOximeter()' could not be found in systole 0.2.4 in recoring.py)

Best Regards
Lars

I'm currently running this task with teens and their parents. We are doing only the interoception condition with about 40 trials due to time. I'm finally going to look at the data and a huge number of our participants received almost exclusively (all or all but one or two) "More" (or "Less") trials. Anyone know what causes that to happen? I'm obviously concerned about the data quality.

Hi! Do you have a future plan with make a MRI version of this package?

In the code, there is a MRI option but device seems not compatible with MRI.

Hi Nicolas! How can we obtain the values of the threshold and the slope for HRD task? I can't find them in the HTML reports. Thanks for your help!

Salut Nicolas!

We are starting a project for which we'd like to use your Cardioception battery, in particular the HR discrimination task. However, we are using BITalino recording devices to record PPG or ECG.

I was wondering about the feasibility of adding support for this hardware. Do you know if there are any known blockers or issues or prerequisites, and whether it would be something implementable rather easily?

(I'd be happy trying to contribute that of course with your guidance)

We are excited about implementing this for our research study and tried to get it running for the first time this week. In HRD/task.py oxi_peaks is imported from systole.detection but it seems the newest version of your systole package no longer includes this function. Was there a renaming of this function? Should we be using an older version of systole?

Hi @LegrandNico ,
Happy to see your greak work and your evolution since Caen!

We would like to use your software with the french version, but it does not seem to work. We use python 3.8 (or 3.9, but there is a lot of incompability version). Accordinf to my student , the version 3.7 does not work with PsychoPy.

Did you try this french version in the last day?

Best,

Frederic